New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5078805 =	34 (1.210)	3 (0.110)	3/238	NT	8.6%	intergenic (‑2/+395)	mgtE/PP_t56	magnesium transporter/tRNA‑Arg
	?	NC_002947	5078837 =	31 (1.140)					intergenic (‑34/+363)	mgtE/PP_t56	magnesium transporter/tRNA‑Arg

CAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCGGGGCTGACGGG  >  NC_002947/5078660‑5078938                                                                                                                                                  |                                                                                                                                      cAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGa                                                                                                                                   >  1:22559/1‑150 (MQ=255) cAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCCTTTTTAACTTCTACTTCGGTCATAGGCGa                                                                                                                                   >  2:448738/1‑150 (MQ=255)           accaGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAactccactcc                                                                                                                         >  1:385962/1‑150 (MQ=255)           accaGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGAAAAAGTGCACTCGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAactccactcc                                                                                                                         >  2:558852/1‑150 (MQ=255)                          gcgcCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGCGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACg                                                                                                          >  2:325199/1‑150 (MQ=255)                                 gtatgattgcgcccgtcagccccgccggggcttgtggaaaaccaccatggacttacccagtagttactcgctaacacgattcatacagaaagatctgaccgattgattccctcGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAggg                                                                                                   >  1:723047‑M1/114‑150 (MQ=255)                                    ggCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGaat                                                                                                <  1:325199/150‑1 (MQ=255)                                            gTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGt                                                                                        >  2:367366/1‑150 (MQ=255)                                                 gTCTTCGACCATGCGCTGACGCTGCGGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAggg                                                                                                   <  2:250392/134‑1 (MQ=255)                                                 gTCTTCGACCATGCGCTGACGCTGCGGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAggg                                                                                                   >  1:250392/1‑134 (MQ=255)                                                 gTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGAt                                                                                   <  1:191463/150‑1 (MQ=255)                                                     cccgccggggcttgtggaaaaccaccatggacttacccagtagttactcgctaacacgattcatacagaaagatctgaccgattgattccctcGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg                                                                                                    >  2:194394‑M1/94‑129 (MQ=255)                                                     cccgccggggcttgtggaaaaccaccatggacttacccagtagttactcgctaacacgattcatacagaaagatctgaccgattgattccctcGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg                                                                                                    <  1:194394‑M1/36‑1 (MQ=255)                                                           aTGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg                                                                                                    <  2:207018/123‑1 (MQ=255)                                                           aTGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAgg                                                                                                    >  1:207018/1‑123 (MQ=255)                                                            tGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATg                                                                        >  1:697089/1‑150 (MQ=255)                                                                  gACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCgt                                                                  <  2:507112/150‑1 (MQ=255)                                                                   aCGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCgtg                                                                 <  2:22559/150‑1 (MQ=255)                                                                      cTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTa                                                              <  2:375077/150‑1 (MQ=255)                                                                      cTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTa                                                              <  1:179001/150‑1 (MQ=255)                                                                          agcagTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGa                                                          <  1:558852/150‑1 (MQ=255)                                                                           gcagTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCttt                                                                               <  2:535009/128‑1 (MQ=255)                                                                           gcagTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCttt                                                                               >  1:535009/1‑128 (MQ=255)                                                                               ttCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTa                                                                          >  1:701868/1‑129 (MQ=255)                                                                               ttCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTa                                                                          <  2:701868/129‑1 (MQ=255)                                                                                     caccTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTgg                                               >  2:445009/1‑150 (MQ=255)                                                                                       ccTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGt                                             >  2:737755/1‑150 (MQ=255)                                                                                       ccTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGt                                             <  1:367366/150‑1 (MQ=255)                                                                                        ctgctccAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTa                                            >  2:741169/6‑150 (MQ=255)                                                                                               aGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCATCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCAt                                     >  2:246717/1‑150 (MQ=255)                                                                                                ggCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCCCTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCAtg                                    <  1:448738/150‑1 (MQ=255)                                                                                                   gATCCTGCAGGCTTTCTTGCGCTTTTTTACCTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCAtggtg                                 >  1:301662/1‑150 (MQ=255)                                                                                                        tGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGtttt                            <  1:737755/150‑1 (MQ=255)                                                                                                        tGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGtttt                            >  2:618893/1‑150 (MQ=255)                                                                                                             gCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCcaca                       >  2:437121/1‑150 (MQ=255)                                                                                                                    tGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCcg                >  1:710204/1‑150 (MQ=255)                                                                                                                     gcgcTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCcgg               >  1:375657/1‑150 (MQ=255)                                                                                                                         ttttttAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCggg           <  1:741169/150‑1 (MQ=255)                                                                                                                                  ttCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCGGGGCTGACggg  >  1:549978/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                      CAGGTTTTCCACCAGGTCGTTGTGCGCGCCTTCCTGGCGATGGGTCAGGTCTTCGACCATGCGCTGACGCTGCAGCAGTTCGACCACCTGGGCCAGGCGATCCTGCAGGCTTTCTTGCGCTTTTTTAACTTCTACTTCGGTCATAGGCGAACTCCACTCCCAGCAGCGGAGCACGCCGAGGGAATCAATCGGTCAGATCTTTCTGTATGAATCGTGTTAGCGAGTAACTACTGGGTAAGTCCATGGTGGTTTTCCACAAGCCCCGGCGGGGCTGACGGG  >  NC_002947/5078660‑5078938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.