| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6000959 = | 36 (1.280) | 3 (0.140) | 3/186 | NT | 11.3% | intergenic (+10/+99) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947 | 6001053 = | 20 (0.940) | intergenic (+104/+5) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||
GTTTGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCG > NC_002947/6000813‑6001106 | ttcctgctcaagggcgaggcggacagcctgccgattccgttttcgccgatgagcggtgtgagcgcgccttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactg < 2:278932‑M1/1‑1 (MQ=255) tttGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCct > 2:319120/1‑150 (MQ=255) tttGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCct > 1:733009/1‑150 (MQ=255) tgctcaagggcgaggcggacagcctgccgattccgttttcgccgatgagcggtgtgagcgcgccttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCct < 1:223784‑M1/5‑1 (MQ=255) cagcagCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTc > 2:472396/1‑150 (MQ=255) gcagcGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTcgc < 2:244069/150‑1 (MQ=255) agcGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCgg < 2:635598/150‑1 (MQ=255) agcGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCgg < 2:468522/150‑1 (MQ=255) gcGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCggg > 2:734885/1‑150 (MQ=255) ggcgaggcggacagcctgccgattccgttttcgccgatgagcggtgtgagcgcgccttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCgg > 2:198033‑M1/138‑150 (MQ=255) gCGAGGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAAc > 2:218550/1‑150 (MQ=255) gCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAAc < 2:663554/150‑1 (MQ=255) aaGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCg < 1:218550/150‑1 (MQ=255) gacagcctgccgattccgttttcgccgatgagcggtgtgagcgcgccttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagagcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCg < 2:71150‑M1/22‑1 (MQ=255) aGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTa > 2:570466/1‑150 (MQ=255) cGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACaa < 1:127421/150‑1 (MQ=255) gccgattccgttttcgccgatgagcggtgtgagcgcgccttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCGCTCCTACa < 2:14133‑M1/30‑1 (MQ=255) tGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTg < 1:558226/150‑1 (MQ=255) aGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCa > 2:67472/1‑150 (MQ=255) gCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTga < 1:704020/150‑1 (MQ=255) aGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CCGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTgaga < 1:319120/150‑1 (MQ=255) ggcggcAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTCACAT‑‑‑‑AGTGCGTTGCATAGCTTCGACAGCGCAGACGGTGTCCTGGGCCGGTAAACCCGCTCCTACAAGTAGTGCACCGCGTGAGAGGGCTgtgg > 1:358497/1‑150 (MQ=255) gcAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGaa < 1:67472/150‑1 (MQ=255) agagCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAATGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAAcc < 1:275411/150‑1 (MQ=255) gagaCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTCCAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCt < 1:445113/150‑1 (MQ=255) cttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCGCTc < 1:112633‑M1/25‑1 (MQ=255) cttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCGCTc > 2:112633‑M1/83‑107 (MQ=255) ttcgctgcggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAg > 2:223784‑M1/82‑150 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGt > 2:678161/1‑150 (MQ=255) ctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGa < 2:30973‑M1/87‑1 (MQ=255) aaGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAaga < 1:570466/150‑1 (MQ=255) acGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGc > 2:236609/2‑150 (MQ=255) gagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAagag > 1:30973‑M1/60‑150 (MQ=255) gattCAATCTGGAAGGGTGGCTTCCTGAGTTGGTTCTACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGGCTGAGAGCGCTGTGGTGAACCTGGAGGAGCGGGTTTACCCGCGAAGAGGCCAg < 1:678161/148‑1 (MQ=37) atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTa < 2:358497/150‑1 (MQ=255) aagaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaa < 1:472396/150‑1 (MQ=255) gaagGGTGGCTTCCTGAGTTGGTTGCAAAAGTGACCAAGTGT‑‑‑TAGCAA‑CTAAACAGGGGAACCCACTTCTAGAATTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaaca > 1:204161/1‑150 (MQ=19) gTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGGGC‑‑‑CGGCCT‑CTTCGCGTGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAAcc > 1:71150/1‑150 (MQ=255) ccTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTGCGCGGGTAAACCCGCTCCTACGAGTAGTGCACCGCCTGAGAGTGCTGTGGTGAACCTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCAGTACTTACAACACAACCCTc < 1:314697/149‑1 (MQ=255) tGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑AGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAagag < 1:710718/120‑1 (MQ=255) tGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑AGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAagag > 2:710718/1‑120 (MQ=255) caAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTGAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGt > 1:320870/1‑150 (MQ=255) tGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTcc < 1:688607/38‑1 (MQ=37) tGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTcc > 2:688607/1‑38 (MQ=37) tGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAg < 2:466095/150‑1 (MQ=255) gAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAg > 2:189567/1‑80 (MQ=255) gAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAg < 1:189567/80‑1 (MQ=255) ccTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGaa < 2:733009/150‑1 (MQ=255) c‑‑‑cGGCCT‑CTTCGCGGGTGAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTAAAGCGAAAAACCg < 2:320870/150‑1 (MQ=255) | GTTTGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGC‑‑‑CGGCCT‑CTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCG > NC_002947/6000813‑6001106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |