New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 311058 =45 (1.600)5 (0.190) 4/234 NT 10.3% coding (1320/2346 nt) PP_0256 putative oxidoreductase
?NC_002947 311097 = 44 (1.640)coding (1281/2346 nt) PP_0256 putative oxidoreductase

CCCAAGCCGATGAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATGCCCATCGCCCA  >  NC_002947/310951‑311246
                                                                                                                                                  |                                                                                                                                                     
ttcaggaaatcgtcaacctgcagatgctgcgtggcaacatcggcgtgcccggcgccggcctgtgcccggtgcgtggccacagcaacgtgcagggtgaccgcaccatgGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATg                                                                                                                                                    >  2:41848‑M1/108‑150 (MQ=255)
    aGCCGATGAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGc                                                                                                                                                >  2:430087/1‑150 (MQ=255)
    aGCCGATGAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGc                                                                                                                                                <  1:74160/150‑1 (MQ=255)
        gATGAAAACCTTGGCTCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGt                                                                                                                                             <  1:241200/149‑1 (MQ=255)
        gATGAAAACCTTGGCTCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGt                                                                                                                                             >  2:241200/1‑149 (MQ=255)
         aTGAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCa                                                                                                                                           <  1:574419/150‑1 (MQ=255)
           gAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCAcc                                                                                                                                         <  2:654946/150‑1 (MQ=255)
           gAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCAcc                                                                                                                                         <  1:445921/150‑1 (MQ=255)
            aaaaCCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCAccc                                                                                                                                        <  2:281327/150‑1 (MQ=255)
              aaCCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTg                                                                                                                                      >  1:56689/1‑150 (MQ=255)
                  ttGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACg                                                                                                                                  >  2:243057/1‑150 (MQ=255)
                         ggCCATCGAGCATCGCATGAATGGCTTCTACGGTGTTATAGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCtgt                                                                                                                           <  1:83113/150‑1 (MQ=255)
                             aTCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGcc                                                                                                                       <  1:678097/150‑1 (MQ=255)
                                gAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACg                                                                                                                    >  2:693221/1‑150 (MQ=255)
                                        cATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGc                                                                                                            >  1:98594/1‑150 (MQ=255)
                                           gAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGcaca                                                                                                         >  1:409798/1‑150 (MQ=255)
                                             aTGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAgg                                                                                                       <  2:179193/150‑1 (MQ=255)
                                                       cGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTCCGGTCCCAATCCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCgg                                                                                             <  2:401894/150‑1 (MQ=255)
                                                        ggTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCGGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCg                                                                                                                                               >  2:260676/1‑99 (MQ=255)
                                                        ggTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCGGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCg                                                                                                                                               <  1:260676/99‑1 (MQ=255)
                                                            ttATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCTATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACg                                                                                        >  1:283029/1‑150 (MQ=255)
                                                             tATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGc                                                                                       <  2:98594/150‑1 (MQ=255)
                                                                ggCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGa                                                                                    <  2:409798/150‑1 (MQ=255)
                                                                    aTTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGtt                                                                                >  1:267582/1‑150 (MQ=255)
                                                                              ggCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACgcagc                                                                      <  1:243057/150‑1 (MQ=255)
                                                                                 acaGGGAAGCCAAAGCGCTTTTCGATGACATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACTCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATc                                                                   >  2:232946/1‑150 (MQ=255)
                                                                                      gAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAg                                                              >  1:127130/1‑150 (MQ=255)
                                                                                         gCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGc                                                                                                            >  1:104147/1‑101 (MQ=255)
                                                                                         gCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGc                                                                                                            <  2:104147/101‑1 (MQ=255)
                                                                                         gCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGtt                                                           <  2:267582/150‑1 (MQ=255)
                                                                                           cAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGa                                                         <  2:127130/150‑1 (MQ=255)
                                                                                            aaaGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGAc                                                        >  1:84824/1‑150 (MQ=255)
                                                                                            aaaGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGAc                                                        >  1:575841/1‑150 (MQ=255)
                                                                                               gcgcTTTTCGATGGCTTCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGAt                                                     <  2:522407/150‑1 (MQ=255)
                                                                                                   ttttCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGTCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCTGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTcc                                                 >  2:743796/1‑150 (MQ=255)
                                                                                                   ttttCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGAc                                                        >  1:30335/1‑143 (MQ=255)
                                                                                                   ttttCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGAc                                                        <  2:30335/143‑1 (MQ=255)
                                                                                                       catgggcatcaacgagcgcccgccagaggcgctgctggatgccCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGaa                                             >  2:41848‑M2/44‑150 (MQ=255)
                                                                                                        gATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAAt                                            >  1:47922/1‑150 (MQ=255)
                                                                                                          tGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATgg                                          >  2:14292/1‑150 (MQ=255)
                                                                                                            GCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTc                                        >  1:648230‑M1/1‑150 (MQ=255)
                                                                                                             catcaacgagcgcccgccagaggcgctgctggatgccCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTcc                                                 >  1:648988‑M2/38‑140 (MQ=255)
                                                                                                             catcaacgagcgcccgccagaggcgctgctggatgcaCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTcc                                                 <  2:648988‑M2/103‑1 (MQ=255)
                                                                                                             CATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCg                                       <  2:130287‑M1/150‑1 (MQ=255)
                                                                                                              ATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCgg                                      <  1:640810‑M1/150‑1 (MQ=255)
                                                                                                                 aacgagcgcccgccagaggcgctcgttgatgccCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGCTTTTCTCAATGGTCggcgc                                   >  2:418313‑M2/34‑148 (MQ=255)
                                                                                                                 aacgagcgcccgccagaggcgctcgttgatgccCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCAc                                   >  1:303250‑M2/34‑150 (MQ=255)
                                                                                                                        gcCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGa                            >  1:543497/1‑150 (MQ=255)
                                                                                                                          ctctGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATg                             >  1:12810/1‑147 (MQ=255)
                                                                                                                          ctctGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATg                             <  2:12810/147‑1 (MQ=255)
                                                                                                                            ctGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGgt                        <  1:434501/150‑1 (MQ=255)
                                                                                                                                  ggcgCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTggg                  <  1:267318/150‑1 (MQ=255)
                                                                                                                                      cTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGAt              <  2:439639/150‑1 (MQ=255)
                                                                                                                                       tCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATg             >  1:738596/1‑150 (MQ=255)
                                                                                                                                         gTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATGcc           >  1:615291/1‑150 (MQ=255)
                                                                                                                                             atgccCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATGCCCATc       >  2:497197‑M2/6‑150 (MQ=255)
                                                                                                                                                  cATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATGCCCATCGCCCa  <  1:41848/150‑1 (MQ=255)
                                                                                                                                                  cATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATGCCCATCGCCCa  <  2:56689/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                     
CCCAAGCCGATGAAAACCTTGGCCCGGCCATCGAGCATCGCATGAATGGCTTCGACGGTGTTATGGCCATTGCGCCGCGGCACAGGGAAGCCAAAGCGCTTTTCGATGGCATCCAGCAGCGCCTCTGGCGGGCGCTCGTTGATGCCCATGGTGCGGTCACCCTGCACGTTGCTGTGGCCACGCACCGGGCACAGGCCGGCGCCGGGCACGCCGATGTTGCCACGCAGCATCTGCAGGTTGACGATTTCCTGAATGGTCGGCACCGAATGACGGTGTTGGGTGATGCCCATCGCCCA  >  NC_002947/310951‑311246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.