| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 380858 | 22 (0.780) | 4 (0.170) | 4/200 | NT | 16.4% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380892 | 23 (1.000) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
CGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGT > NC_002947/380747‑381040 | cGAAGCCGAGGGCTACATCCTGTCGTTCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg > 1:253109‑M2/1‑146 (MQ=255) gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgg < 1:373993‑M2/150‑6 (MQ=255) aGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcggg < 1:709706‑M2/150‑13 (MQ=255) tCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgc < 2:566649‑M2/150‑22 (MQ=255) tGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGAc > 2:547890/1‑150 (MQ=255) tgctgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCtt < 1:566649/150‑1 (MQ=255) gctgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTc < 1:547890/150‑1 (MQ=255) ccGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga > 2:414466‑M2/1‑109 (MQ=255) aGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACCCCCGCTCCCACAGGGTCATCGCTATCTTCACGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCggg < 1:258944/150‑1 (MQ=255) tCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga < 2:78503‑M2/113‑24 (MQ=255) tCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga > 1:78503‑M2/1‑90 (MQ=255) gATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACATGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGATCGTTCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAg < 1:511576/150‑1 (MQ=255) ttACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga > 1:200821‑M2/1‑86 (MQ=255) ttACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga < 2:200821‑M2/109‑24 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAc > 2:746171/1‑150 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAc > 2:633645/1‑150 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAc > 2:259714/1‑150 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGCTCAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCGTCGGGGTGCGGGACCGGGCTACCAGGCCATTGAGGTCTAc > 1:354941/1‑150 (MQ=39) gATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGTGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCgg > 2:282724/1‑126 (MQ=255) gATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGTGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCgg < 1:282724/126‑1 (MQ=255) tCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGc > 2:409718/1‑150 (MQ=255) ggCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCACACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGgcg < 1:418925/150‑1 (MQ=255) cACGCCCGCTCCCGCAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCgcgc < 1:259714/150‑1 (MQ=255) cACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCgcgc < 1:633645/150‑1 (MQ=255) tCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAt < 2:709706/150‑1 (MQ=255) cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgcg > 2:354839/1‑150 (MQ=255) acaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttcgt < 1:428376‑M2/150‑114 (MQ=255) ggTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggc > 2:83943‑M2/1‑33 (MQ=255) ggTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggc < 1:83943‑M2/141‑109 (MQ=255) tCATCGCTATCTTCAGGACTGCGGTGAACCTTGTTGATGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGt > 1:176995/1‑150 (MQ=255) gCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttcgtcctcttcggta > 2:428376‑M2/1‑26 (MQ=255) cTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg < 2:22787/127‑1 (MQ=255) cTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg > 1:22787/1‑127 (MQ=255) cTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAg < 1:661112/150‑1 (MQ=255) gTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCgt < 2:515202/96‑2 (MQ=255) gTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCgg > 1:515202/1‑96 (MQ=255) gTGAACCTTGGGGGTGCGGGGGGGCCGGCGACTGCTTCTAGGTGCGGACCCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGCCAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGt < 2:452236/150‑1 (MQ=255) ccTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATg > 2:665281/1‑150 (MQ=255) cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGt > 2:416801/1‑150 (MQ=255) | CGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGT > NC_002947/380747‑381040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |