| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 747113 | 21 (0.750) | 5 (0.190) | 5/230 | NT | 20.1% | intergenic (‑237/‑557) | PP_0638/PP_5448 | transposase/hypothetical protein |
| ? | NC_002947 | = 747138 | 20 (0.760) | intergenic (‑262/‑532) | PP_0638/PP_5448 | transposase/hypothetical protein | |||||
CGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCG > NC_002947/747001‑747284 | cGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGAcc < 2:679153/150‑1 (MQ=255) tCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACcatcat > 2:677230/1‑150 (MQ=255) tCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCtt < 1:285730/150‑1 (MQ=255) tCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCAACACACGGCACGCCTTCGGTAATCAGCAGccc < 1:395648/150‑1 (MQ=255) atatCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTc < 1:153229/150‑1 (MQ=255) atCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGc > 1:389483/1‑150 (MQ=255) cTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCAttt < 1:523906/150‑1 (MQ=255) tGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCgg < 2:261713/150‑1 (MQ=255) ggCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCggg < 1:677230/150‑1 (MQ=255) aGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCggggg < 2:426588/139‑1 (MQ=255) aGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCggggg > 1:426588/1‑139 (MQ=255) ggAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCAt > 1:518459/1‑150 (MQ=255) gAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATa < 1:418352/150‑1 (MQ=255) aTTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATAccc < 1:729532/150‑1 (MQ=255) tttCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCGCGGAAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCa < 2:624284/150‑1 (MQ=255) gTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTAGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGaaaaa > 2:301516/1‑150 (MQ=255) tAACAGCGGCGGCACCGACCGTTCTGGTGCTGGCAATCACGTCACCAACGGTGAGGCACCCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAAc < 1:297398/150‑1 (MQ=255) agagGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACATAGCTCGAGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGt > 1:196913/1‑150 (MQ=255) cgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACgccagcaccagaacggtcggtgccgcccctcttacccgaaatttcctatgaatctca < 1:591527‑M2/97‑58 (MQ=255) cgTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACgccagcaccagaacggtcggtgccgcccctcttacccgaaatttcctatgaatctca > 2:591527‑M2/1‑40 (MQ=255) cTGGCAATGACGTCACCAACGGTGAGGCACgccagcaccagaacggtcggtgccgcccctcttacccgaaatttccta > 2:734831‑M2/1‑30 (MQ=255) cTGGCAATGACGTCACCAACGGTGAGGCACgccagcaccagaacggtcggtgccgcccctcttacccgaaatttccta < 1:734831‑M2/78‑49 (MQ=255) tGGCAATGACGTCACCAACGGTGAGGCACgccagcaccagaacggtcggtgccgcccctcttacccgaaatttcctatgaatctcagccaatcgtgagcgatatcacgagctgccctgccgctgagggttggaggctgaacgcagccatt < 1:653719‑M2/150‑122 (MQ=255) gCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGt > 1:404462/1‑150 (MQ=255) cAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTAccc > 2:625046/1‑150 (MQ=255) tGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCCGGGACCTTTGTCCGAGTTATGAGATTACCCaagtgg < 2:404462/150‑5 (MQ=255) gCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCg > 1:214142/1‑150 (MQ=255) | CGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTGGCAATGACGTCACCAACGGTGAGGCACGCCAGCACGACCCACCATCATCACGCCTTCGGTAATCAGCAGCCCACCTCGCATTTGGATTCGGGGGGGGCTGAGTCATACCCAGAAAAACGTTACGAATCCCTCAGGGACCTTTGTCCGAGTTATGAGATTACCCAACGGGGGCG > NC_002947/747001‑747284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |