New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2474161 =	24 (0.850)	6 (0.260)	6/200	NT	28.2%	intergenic (‑23/+157)	PP_2167/tal	PhoD‑like phosphatase/transaldolase
	?	NC_002947	2474229 =	11 (0.480)					intergenic (‑91/+89)	PP_2167/tal	PhoD‑like phosphatase/transaldolase

CAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTTCTCAAGCTTTTCCTGGTCCCGTGCAAACTGACGGAT  >  NC_002947/2474082‑2474377                                                                                                                                                    |                                                                                                                                                     cAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCga                                                                                                                                                    <  1:192469/150‑1 (MQ=255)                           gaACGAGGGGCAACGGGTTAGGGGAGGTCATGGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTgg                                                                                                                          >  1:206616/1‑150 (MQ=255)                                           gTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCgg                                                                                                          >  2:667339/1‑150 (MQ=255)                                                      tCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGaa                                                                                               <  1:551734/150‑1 (MQ=255)                                                      tCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGaa                                                                                               <  2:549357/150‑1 (MQ=255)                                                        aTCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAaca                                                                                             >  1:747646/1‑150 (MQ=255)                                                           gACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCATACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACtt                                                                                          <  2:584676/150‑1 (MQ=255)                                                                      tGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCa                                                                               <  1:667339/150‑1 (MQ=255)                                                                                                 gcccgctcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACt                                                                                                  <  1:1694‑M2/53‑1 (MQ=255)                                                                                                 gcccgctcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACt                                                                                                  >  2:1694‑M2/52‑104 (MQ=255)                                                                                                  cccgctcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGc                                                                            >  1:596778‑M2/51‑125 (MQ=255)                                                                                                  cccgctcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGc                                                                            <  2:596778‑M2/75‑1 (MQ=255)                                                                                                   ccgctcctacactgatcgatgtaagggcgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTAAAGACCGTCAGGCAAACACGAACTGTATCAGGCCTTTTc                                                  >  2:435448‑M2/50‑150 (MQ=255)                                                                                                     gcaattACATCGAGCAGTGGAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAg                                                <  1:720858/146‑1 (MQ=255)                                                                                                         ttACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTAt                                            <  1:562909/150‑1 (MQ=255)                                                                                                            cactgatcgatgtaagggcgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGAAAACACGAACTGTATCAGGCCTTTTCAGCTATCaa                                         <  1:435448‑M2/110‑1 (MQ=255)                                                                                                                gATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTtc                                     >  2:195210/1‑150 (MQ=255)                                                                                                                     gtgtAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTTCTCAAg                                >  2:689238/1‑150 (MQ=255)                                                                                                                              cgggcttgcccgcgaacaggccCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTGCTCAAGCTTTTCCTg                       <  2:747646‑M2/128‑1 (MQ=255)                                                                                                                                 gcttgcccgcgaacaggccCGAGAATTCAATACACAAGTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTTCTCAAGCTTTTCCTGGTc                    >  1:607890‑M2/20‑150 (MQ=255)                                                                                                                                                   cCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTTCTCAAGCTTTTCCTGGTCCCGTGCAAACTGACGGAt  >  1:87758‑M2/2‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CAGGCGGCGCAGTACCGGGCCGGCGAGAACGAGGGGCAACGGGTTAGGGGAGGTCATCGACAGCTCGGGTGGCTATGGCGGCCTGTTCGCGGGCAAGCCCGCCCTTACATCGATCAGTGTAGGAGCGGGCTTGCCCGCGAACAGGCCCGAGAATTCAATACACAACTAAGGCGTGGCAAACAAAACGGGCGGAAAATACTGAACACTTCCCGCCCGTCAGGCAAACACGAACTGTATCAGGCCTTTTCAGCTATCAACTTCTCAAGCTTTTCCTGGTCCCGTGCAAACTGACGGAT  >  NC_002947/2474082‑2474377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.