New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947957 =	19 (0.670)	3 (0.140)	3/190	NT	25.3%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3948042 =	3 (0.140)					coding (51/1797 nt)	PP_3483	type II secretion system protein

TGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATC  >  NC_002947/3947897‑3948176                                                                                                                                                  |                                                                                                                                       tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                                                    >  1:146560/1‑150 (MQ=255)                        aggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                             <  2:146560/150‑1 (MQ=255)                                                      gCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCACGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATGGAATGCTTCTGGCGTggacgac                                                                               >  1:502500/1‑145 (MQ=255)                                                                          GCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                                     >  1:258115‑M1/1‑108 (MQ=255)                                                                          GCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                                     <  2:258115‑M1/108‑1 (MQ=255)                                                                               ctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAg                                                      >  2:423062‑M2/68‑150 (MQ=255)                                                                                   CACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctg                                                  <  1:73431‑M1/150‑1 (MQ=255)                                                                                    acaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCAt                                                                                                      <  2:62112‑M2/35‑1 (MQ=255)                                                                                    acaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCAt                                                                                                      >  1:62112‑M2/63‑97 (MQ=255)                                                                                       GGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTc                                              <  2:274849‑M1/150‑1 (MQ=255)                                                                                                   gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                                                    <  1:749482/52‑1 (MQ=255)                                                                                                   gTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                                                    >  2:749482/1‑52 (MQ=255)                                                                                                    tCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTGCGGGGTTGCATCGAATGATTCTGGCATGGCCTGCGAATCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAgggaggag                                 >  2:271804/1‑145 (MQ=255)                                                                                                                   cATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTAGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTccc                  >  1:218289/1‑150 (MQ=255)                                                                                                                       ctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgt              <  1:274849‑M2/123‑1 (MQ=255)                                                                                                                         gtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGa            <  1:271804‑M2/125‑1 (MQ=255)                                                                                                                                   gcctgctcgccaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtc  <  2:358563‑M2/135‑1 (MQ=255)                                                                                                                                      tgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggc                                                    <  1:468741‑M2/85‑1 (MQ=255)                                                                                                                                      tgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggc                                                    >  2:468741‑M2/13‑97 (MQ=255)                                                                                                                                                  |                                                                                                                                       TGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATC  >  NC_002947/3947897‑3948176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.