| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4586063 = | 6 (0.210) | 7 (0.360) | 7/170 | NT | 77.2% | intergenic (+102/+115) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 4586167 = | 0 (0.000) | intergenic (+206/+11) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
TAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGCGATGCGTGC > NC_002947/4586081‑4586315 | TAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGACGCGCCAGCCCCACAACGCCCACGTGCATCCGCAACCGCCGCCACACTGATCTCACGCATG‑CGGa < 2:351662‑M1/150‑1 (MQ=255) CTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGc > 1:351662‑M1/1‑150 (MQ=255) taccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCAAATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAt > 2:700583‑M2/75‑124 (MQ=255) taccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCAAATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAt < 1:700583‑M2/50‑1 (MQ=255) ccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTg > 2:585461‑M2/73‑150 (MQ=255) CAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGc < 2:263995‑M1/150‑1 (MQ=255) aggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCcaca > 2:735905‑M2/71‑115 (MQ=255) aggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCcaca < 1:735905‑M2/45‑1 (MQ=255) gggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCcgg > 2:578314‑M2/69‑150 (MQ=255) GGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAAccc > 1:585708‑M1/1‑86 (MQ=255) GGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAAccc < 2:585708‑M1/86‑1 (MQ=255) aaggccggcacggtccctggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTa < 1:585461‑M2/98‑1 (MQ=255) tggtaggagcgggtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGta > 1:430493‑M2/36‑150 (MQ=255) gtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACtcgt < 2:171676‑M2/103‑1 (MQ=255) gtttacccgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACtcgt > 1:171676‑M2/24‑126 (MQ=255) cgcgaagaggccggccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGaa < 2:430493‑M2/134‑1 (MQ=255) gagGCCGGCCGCGCAAGCACATAAGCACACGCATGCAGCCGCAATCTCCGCAACCCTGAAAGCGTG‑GTGACTGGAGTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGc < 1:578314/150‑1 (MQ=255) gccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGtat > 2:431646‑M2/4‑119 (MQ=255) gccGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGtat < 1:431646‑M2/116‑1 (MQ=255) cGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCCGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGCGATGCGTGc > 1:435602‑M2/2‑150 (MQ=255) | TAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG‑CGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTTGAAGTGTGCGATGCGTGC > NC_002947/4586081‑4586315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |