New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5288471	11 (0.390)	4 (0.190)	4/186	NT	27.3%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288505	13 (0.610)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B

TTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACA  >  NC_002947/5288362‑5288638                                                                                                                                                |                                                                                                                                      tttCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtggg                                                                                                                                 <  2:626996‑M2/150‑7 (MQ=255)      caTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgg                                                                                                                            >  2:287393‑M2/1‑139 (MQ=255)       aTCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTACTACCtgtgggagcggg                                                                                                                           >  2:65293‑M2/1‑138 (MQ=255)          aGGGCCTGTGGTTGGTCTGTGCAAGGATTCGACAACCGCTTGTCGAGGCCAAGTCCCGCCGCGCCTGCATGGGCCTCCTCGCGGGCTCGCCCGCACCCACAAGTACTGCAAAGCACCGGACGCCTGCGTAATACCTCTGGGAGCCCGCaa                                                                                                                        <  2:217931/150‑1 (MQ=255)          aGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaa                                                                                                                        >  1:626996‑M2/1‑135 (MQ=255)             gCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgt                                                                                                                                    >  1:362657‑M2/1‑132 (MQ=255)             gCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgt                                                                                                                                    <  2:362657‑M2/135‑4 (MQ=255)                    gttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaa                                                                                                               >  1:158154‑M2/1‑125 (MQ=255)                    gttggtCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaa                                                                                                               <  2:158154‑M2/149‑25 (MQ=255)                         tCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcc                                                                                                         <  2:378222‑M2/150‑31 (MQ=255)                                                                        gcCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGGCCATTAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGTCCGGTACAGACATAAAATTACTGTGCCTTGCACAACACCTTGTCCacct                                                          >  1:656963/1‑147 (MQ=38)                                                                                   ccTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATaa                                               <  1:378222/150‑1 (MQ=255)                                                                                    ctctTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGGCCTTGAAACCTGCGGAATACCTGTGGGAGGGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAAAACCTTGTCCAGATGGGCCTCATAAg                                              >  1:271476/1‑150 (MQ=255)                                                                                     tctTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGc                                                      <  1:187695/141‑1 (MQ=255)                                                                                     tctTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGc                                                      >  2:187695/1‑141 (MQ=255)                                                                                                ttGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAacac                                                                     <  2:8337/115‑1 (MQ=255)                                                                                                ttGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAacac                                                                     >  1:8337/1‑115 (MQ=255)                                                                                                     cGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgt                             >  1:374393‑M2/1‑44 (MQ=255)                                                                                                     cGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgt                             <  2:374393‑M2/150‑107 (MQ=255)                                                                                                           cacaAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCACGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGc                                          <  1:646220/131‑1 (MQ=255)                                                                                                           cacaAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCACGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGc                                          >  2:646220/1‑131 (MQ=255)                                                                                                             caAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaaaacc                      >  2:225805‑M2/1‑36 (MQ=255)                                                                                                             caAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggcccatacaggcgccgctggacttggcctcgacaagcggttatctaatccttgcacagaccaaccacaggccctgatgtgaaaacc                      <  1:225805‑M2/149‑114 (MQ=255)                                                                                                                    tGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGTAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACAcc                                                                    <  2:201889/96‑1 (MQ=255)                                                                                                                    tGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGCAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACAcc                                                                    >  1:201889/1‑96 (MQ=255)                                                                                                                      cAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggc                                                                                                          <  2:146358‑M2/56‑30 (MQ=255)                                                                                                                      cAAAGTCCTTGAAACCTGCGTAATACCtgtgggagcgggcaagcccgcgaagaggc                                                                                                          >  1:146358‑M2/1‑27 (MQ=255)                                                                                                                                      tGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACtgt                                                                                   <  2:196036/63‑1 (MQ=255)                                                                                                                                      tGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACtgt                                                                                   >  1:196036/1‑63 (MQ=255)                                                                                                                                               ccTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCcaca  <  1:696726/135‑1 (MQ=255)                                                                                                                                               ccTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCcaca  >  2:696726/1‑135 (MQ=255)                                                                                                                                                |                                                                                                                                      TTTCACATCAGGGCCTGTGGTTGGTCTGTGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACA  >  NC_002947/5288362‑5288638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.