New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698783 =	27 (0.960)	4 (0.160)	4/212	NT	14.0%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698866 =	26 (1.070)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

CTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGA  >  NC_002947/5698728‑5699006                                                                                                                                           |                                                                                                                                             cTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGaa                                                                                                                                   <  2:703556/150‑1 (MQ=255) cTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGaa                                                                                                                                   >  2:596893/1‑150 (MQ=255)      acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccct                                                                                                                              >  1:369662/1‑150 (MQ=255)          aaCGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTcccc                                                                                                                          >  1:498206/1‑150 (MQ=255)             gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGGTCCGTGCGGGAGCGGGCTTGCCCGCGAAGAGGGCCTTGAATACCTcccccct                                                                                                                       >  2:154618/1‑148 (MQ=255)                   cTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCAAAGAGGCCCTTGAATCCCCCCCCCCTAAGCTg                                                                                                                 >  2:709038/1‑150 (MQ=255)                         cgTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTTCTCCATAAGCTGTGAGCt                                                                                                           <  2:164701/150‑1 (MQ=255)                          gTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                                          >  1:314765/1‑150 (MQ=255)                            tACATCCTGTAAGAGCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCGGCGCGCGCCACCACAACAATTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCGGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgtg                                                                                                        <  1:154618/150‑1 (MQ=255)                              cATTCTGTAAGACCGGTTTCGACAGTTTCGCTGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                                          >  2:445741/1‑146 (MQ=255)                              cATTCTGTAAGACCGGTTTCGACAGTTTCGCTGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                                          <  1:445741/146‑1 (MQ=255)                                ttCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtc                                                                                                    >  2:725870/1‑150 (MQ=255)                                    gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatca                                                                                                >  1:686478/1‑150 (MQ=255)                                    gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCAGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatca                                                                                                <  1:709038/150‑1 (MQ=255)                                          ccGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc                                                                                          <  1:596893/150‑1 (MQ=255)                                            ggTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                        <  2:686478/150‑1 (MQ=255)                                              tttCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCGATAAGCTGGAAGGTGTGCTTCATCAGCTCCCgaga                                                                                      >  1:424345/1‑150 (MQ=255)                                                               GCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGccc                                                                     >  1:725870‑M1/1‑150 (MQ=255)                                                                 aagcccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcat                                                                                                  <  2:331069‑M2/45‑1 (MQ=255)                                                                 aagcccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcat                                                                                                  >  1:331069‑M2/75‑119 (MQ=255)                                                                   GCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcct                                                                 <  1:156107‑M1/150‑1 (MQ=255)                                                                      cgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctgcc                                                              >  2:666840‑M2/70‑150 (MQ=255)                                                                           cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGTTCGGTCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTAccc                                                         >  2:669652/1‑149 (MQ=255)                                                                                 gcgcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCTGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCa                                                   >  2:604798/1‑150 (MQ=255)                                                                                 gcgcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTATGCCCATGGCCCGCCTGCCTACCGCCATCa                                                   >  1:190149/1‑150 (MQ=255)                                                                                   gcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAc                                                 <  2:314765/150‑1 (MQ=255)                                                                                        cacaggcccaagggttgtggtggcgcgtgcgggggcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGca                                            >  2:393428‑M2/52‑150 (MQ=255)                                                                                          caACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCAGCGAAGAGCAAATTGGAGCCCTCCCCCATGAGCTGGAAGCTTTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGcaca                                          >  1:655837/1‑150 (MQ=255)                                                                                                    gCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCaa                                <  2:190149/150‑1 (MQ=255)                                                                                                            tgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTcccc                                                                                                                          <  2:676683/52‑1 (MQ=255)                                                                                                            tgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTcccc                                                                                                                          >  1:676683/1‑52 (MQ=255)                                                                                                                    gCGGGGGCGGGCTTGCGCGCGAAGCGGCCCTCGAATCCCTCCCCCATAAGCTGCAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCAcc                <  2:498206/150‑1 (MQ=255)                                                                                                                         ggcgggcTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                              >  2:633533/1‑83 (MQ=255)                                                                                                                         ggcgggcTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                              <  1:633533/83‑1 (MQ=255)                                                                                                                            gggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACCAAGCCTCCAAGACCCTCAGCCTCACCTACGCAcc        >  1:118180‑M2/16‑150 (MQ=255)                                                                                                                              gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                         >  1:240137‑M2/14‑51 (MQ=255)                                                                                                                              gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                         <  2:240137‑M2/38‑1 (MQ=255)                                                                                                                                  gcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGa  <  2:156107‑M2/141‑1 (MQ=255)                                                                                                                                    ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGa                              >  1:719238‑M2/8‑120 (MQ=255)                                                                                                                                    ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGa                              <  2:719238‑M2/113‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             CTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGA  >  NC_002947/5698728‑5699006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.