New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5698799	27 (0.960)	5 (0.210)	5/212	NT	16.9%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5698848	26 (1.070)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

CGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACC  >  NC_002947/5698702‑5698992                                                                                                                                                   |                                                                                                                                                 ggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGgggcg                                                                                                                                               >  2:666840‑M1/82‑150 (MQ=255) cGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcg                                                                                                                                               >  2:647069‑M2/1‑147 (MQ=255)                           cTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGaa                                                                                                                     <  2:703556/150‑1 (MQ=255)                           cTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGaa                                                                                                                     >  2:596893/1‑150 (MQ=255)                                acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccct                                                                                                                >  1:369662/1‑150 (MQ=255)                                    aaCGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTcccc                                                                                                            >  1:498206/1‑150 (MQ=255)                                     atgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCtt                                                                                                                                          >  1:331069‑M1/46‑119 (MQ=255)                                     atgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCtt                                                                                                                                          <  2:331069‑M1/74‑1 (MQ=255)                                       gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGGTCCGTGCGGGAGCGGGCTTGCCCGCGAAGAGGGCCTTGAATACCTcccccct                                                                                                         >  2:154618/1‑148 (MQ=255)                                             cTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCAAAGAGGCCCTTGAATCCCCCCCCCCTAAGCTg                                                                                                   >  2:709038/1‑150 (MQ=255)                                                   cgTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTTCTCCATAAGCTGTGAGCt                                                                                             <  2:164701/150‑1 (MQ=255)                                                    gTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                            >  1:314765/1‑150 (MQ=255)                                                      tACATCCTGTAAGAGCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCGGCGCGCGCCACCACAACAATTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCGGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgtg                                                                                          <  1:154618/150‑1 (MQ=255)                                                        cATTCTGTAAGACCGGTTTCGACAGTTTCGCTGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                            <  1:445741/146‑1 (MQ=255)                                                        cATTCTGTAAGACCGGTTTCGACAGTTTCGCTGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                            >  2:445741/1‑146 (MQ=255)                                                          ttCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtc                                                                                      >  2:725870/1‑150 (MQ=255)                                                              gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatca                                                                                  >  1:686478/1‑150 (MQ=255)                                                              gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCAGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatca                                                                                  <  1:709038/150‑1 (MQ=255)                                                                 gatctggtttcgACATCTTCGCGGGCACGCCCGCTCCTGCACGCGCCACCACAGCCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaagctgtcgaatccggtcttacagaatgtaacgcgacaggtcttcgttctgt                                                                               >  1:716842‑M2/6‑83 (MQ=255)                                                                    ccGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc                                                                            <  1:596893/150‑1 (MQ=255)                                                                      ggTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                          <  2:686478/150‑1 (MQ=255)                                                                       gTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATTCGTGCGGGGgcgggcctgcccgcgaagctgtcgaaaccggtcttacagaatgtgacgcgacaggggttcgttctgtgagatc                                                                         <  2:716842‑M2/150‑74 (MQ=255)                                                                        tttCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCGATAAGCTGGAAGGTGTGCTTCATCAGCTCCCgaga                                                                        >  1:424345/1‑150 (MQ=255)                                                                                         GCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGccc                                                       >  1:725870‑M1/1‑150 (MQ=255)                                                                                             gCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttc                                                                                  >  1:385085‑M2/1‑55 (MQ=255)                                                                                             gCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttc                                                                                  <  2:385085‑M2/119‑65 (MQ=255)                                                                                             GCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcct                                                   <  1:156107‑M1/150‑1 (MQ=255)                                                                                                cGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGgcgggcttgcccgcgaaactgtcgaaaccggtcttacagaatgtaacgcgacaggtcttcgttctgtgccagctcacccaggtggctgttaacatacg                                                <  2:644980‑M2/150‑99 (MQ=255)                                                                                                     cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGTTCGGTCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTAccc                                           >  2:669652/1‑149 (MQ=255)                                                                                                           gcgcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCTGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCa                                     >  2:604798/1‑150 (MQ=255)                                                                                                           gcgcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTATGCCCATGGCCCGCCTGCCTACCGCCATCa                                     >  1:190149/1‑150 (MQ=255)                                                                                                             gcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAc                                   <  2:314765/150‑1 (MQ=255)                                                                                                                    caACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCAGCGAAGAGCAAATTGGAGCCCTCCCCCATGAGCTGGAAGCTTTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGcaca                            >  1:655837/1‑150 (MQ=255)                                                                                                                              gCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCaa                  <  2:190149/150‑1 (MQ=255)                                                                                                                                      tgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTcccc                                                                                                            <  2:676683/52‑1 (MQ=255)                                                                                                                                      tgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTcccc                                                                                                            >  1:676683/1‑52 (MQ=255)                                                                                                                                              gCGGGGGCGGGCTTGCGCGCGAAGCGGCCCTCGAATCCCTCCCCCATAAGCTGCAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCAcc  <  2:498206/150‑1 (MQ=255)                                                                                                                                                   ggcgggcTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                >  2:633533/1‑83 (MQ=255)                                                                                                                                                   ggcgggcTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                <  1:633533/83‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACC  >  NC_002947/5698702‑5698992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.