| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,178,892 | T→G | 12.1% | Q631P (CAA→CCA) | PP_1033 ← | sulfatase domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,178,892 | 0 | T | G | 12.1% | 79.5 / 3.5 | 37 | Q631P (CAA→CCA) | PP_1033 | sulfatase domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (12/20); new base G (3/2); total (15/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCGCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTGGTCAAAGAACGTGGACATGAA > NC_002947/1178751‑1179022 | cccGCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGc < 2:83010/150‑1 (MQ=255) gCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCttt > 1:528971/1‑150 (MQ=255) gCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCCCAACGCGTGGAGGGTgacga < 1:569471/150‑5 (MQ=255) gCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCCCAACGCGTGGAGGGTga < 2:321454/147‑2 (MQ=255) gCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCCCAACGCGTGGAGGGTga > 1:321454/1‑146 (MQ=255) tGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTcc < 1:393684/150‑1 (MQ=255) gCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCgg < 2:120660/150‑1 (MQ=255) tCTGGTTCTTGTTCGTTCAGATTGCTTATTCCTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTc > 1:186969/1‑136 (MQ=255) tCTGGTTCTTGTTCGTTCAGATTGCTTATTCCTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTc < 2:186969/136‑1 (MQ=255) ttcgttcAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTAt < 1:661621/150‑1 (MQ=255) aTTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAgg < 2:528971/150‑1 (MQ=255) cTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTggg < 1:210778/102‑1 (MQ=255) cTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTggg > 2:210778/1‑102 (MQ=255) ttATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTc < 1:51869/150‑1 (MQ=255) ttATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTc > 2:599987/1‑150 (MQ=255) ttATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCGGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTc < 1:105998/150‑1 (MQ=255) ttctGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACt > 2:580591/1‑150 (MQ=255) tGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTgggg > 2:294548/1‑93 (MQ=255) tGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTgggg < 1:294548/93‑1 (MQ=255) tGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATc < 2:250325/106‑1 (MQ=255) tGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATc > 1:250325/1‑106 (MQ=255) gcgaaTAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATg > 1:595363/4‑150 (MQ=255) tttCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCTATGAACTCGTCACCCTCCACGCGTGTGCGGTGCTTTTCTTGCTGGTTAACCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATATATTTGTACgg > 1:617166/1‑150 (MQ=255) tttCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACgg < 1:346135/150‑1 (MQ=255) aGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTcca > 2:247192/1‑150 (MQ=255) ttATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAg < 1:580591/150‑1 (MQ=255) tataGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCTTTGGTGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTTGTCAGGGTGTTCTAACTGTATTCGTATATGTATTTGTACGGGTGCTCCACCAAgg < 2:521659/150‑1 (MQ=255) gAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTc > 1:37524/1‑93 (MQ=255) gAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTc < 2:37524/93‑1 (MQ=255) ctcACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTGGTCAAAg < 2:617166/150‑1 (MQ=255) aCTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAg < 1:421390/126‑1 (MQ=255) aCTGCGATGAACTCGTCACCCTCCACGCGTGGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAg > 2:421390/1‑126 (MQ=255) gCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGCCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTGGTCAAAGAACGTg < 2:651463/150‑1 (MQ=255) cTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTGGTCAAAGAACGTGGACATgaa > 2:642319/1‑150 (MQ=255) cTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGACAGTCGGTCAAAGAACGTGGACATgaa < 1:606266/150‑1 (MQ=255) gTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTgg < 1:334074/127‑1 (MQ=255) gTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTgg > 2:334074/1‑127 (MQ=255) | CCCGCATGATTGCGGGCTTTCTGGTTCTTGTTCGTTCAGATTGCTTATTCTTCTGGCTTTCTGGCAAATAGCGCTTTCTGGTAGGCGTTATAGGAAAGCAGCCTGCTCCTCACTGCGATGAACTCGTCACCCTCCACGCGTTGGGGGTGCTTTTCCTGCGGGTCATCCTCAAGGTTGTATTTAGTCAGGGTGTCCGAACTGAATTCGTATATGTATTTGTACGGGTGCTCCACCAAGGCTGACGCCAGTTGGTCAAAGAACGTGGACATGAA > NC_002947/1178751‑1179022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |