| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,239,106 | G→T | 13.3% | intergenic (‑75/‑300) | argF ← / → PP_1080 | ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,239,106 | 0 | G | T | 13.3% | 69.1 / 3.0 | 30 | intergenic (‑75/‑300) | argF/PP_1080 | ornithine carbamoyltransferase/molybdopterin‑binding oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (12/14); new base T (2/2); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 | |||||||||||
GGATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTATTT > NC_002947/1238968‑1239249 | ggATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCTTACGCCGCag > 1:364001/1‑148 (MQ=255)ggATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCTTACGCCGCag < 2:364001/149‑2 (MQ=255) ccccGAGCAATTCGTCGGTGGTGAAGGCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCgg > 2:610307/1‑150 (MQ=255) cccGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACgggctgta > 2:462596/1‑145 (MQ=255) cccGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGa < 2:145654/150‑1 (MQ=255) ttCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAgg < 2:680353/150‑1 (MQ=255) ggtgAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGgcgc < 2:739114/150‑1 (MQ=255) aaGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATa < 2:175857/150‑1 (MQ=255) cagcagGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCg > 1:327189/1‑121 (MQ=255) cagcagGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCg < 2:327189/121‑1 (MQ=255) cagcagGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACtata > 2:389141/1‑150 (MQ=255) aaaGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAAt < 1:35800/145‑1 (MQ=255) aaaGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAAt > 2:35800/1‑145 (MQ=255) tGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTTACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGa > 2:488517/1‑150 (MQ=255) gAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTTACAACGGGGGTGACCTGCGGTGTACGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAggggggca > 2:678192/1‑148 (MQ=255) ttATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGa > 2:102266/1‑150 (MQ=255) tATCTGCAACGATATGCAAATAGCCCGTATGATTTTTTTTAACAACTGAGGTTACCTTCGGCGTAAGCCGCACGGTGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAt < 2:271038/150‑1 (MQ=255) aTCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAGCGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAtt < 1:102266/150‑1 (MQ=255) gTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtg > 1:419881/1‑150 (MQ=255) ttgtaGGTCGGCCGTATGGTTTTTTTTGACAACGGGGGCGTGCTGCGGCGTAAGCCGCAGGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgtt < 1:384040/146‑1 (MQ=255) aTGCCGGTCGTCCATATGTTTTGGTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGATGTGGCAGTAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgtt < 1:610307/150‑1 (MQ=255) aTGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgtt < 1:486196/150‑1 (MQ=255) gACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGAttgcaaagggtgttgcaaagggt < 1:389141/150‑1 (MQ=255) tGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTa > 1:597742/1‑150 (MQ=255) ttttGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATaa > 2:44681/1‑73 (MQ=255) ttttGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATaa < 1:44681/73‑1 (MQ=255) ttttGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGAAGAAATAGGGAAAGCCGCAATACTATAAGTAAATGGCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTg < 1:462596/150‑1 (MQ=255) ccccgtGCGGCTTACGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATtgcaaagggtgttgcaaagggtgt < 1:546480/118‑1 (MQ=255) ccccgtGCGGCTTACGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATtgcaaagggtgttgcaaagggtgt > 2:546480/6‑123 (MQ=255) tGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCGGGAATTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTAttt > 1:228644/1‑150 (MQ=255) | GGATCACCCCGAGCAATTCGTCGGTGGTGAAGTCCAGCAGGGAGAGAAAGTGCCTAGCGCTCATGAGTGACTACCTTATCTGCAACGGTATGCAGGTCGACCGTATGGTTTTTTTTGACAACGGGGGTGACCTGCGGCGTAAGCCGCACGGGGCGGACGAAATAGGGAAAGGCGCAATACTATAAGTAAATGTCGCCTGAAGCCAAGGGGGGAAAAGCGGCGTGATTGCAAAGGGTGTTGCAAAGGGTGTCTTTACCCGTTGGCCCGTGCTGTTCTTTATTT > NC_002947/1238968‑1239249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |