| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,669,717 | C→A | 15.4% | intergenic (+41/+34) | prpD → / ← acnB | 2‑methylcitrate dehydratase/aconitate hydratase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,669,717 | 0 | C | A | 15.4% | 98.1 / 8.3 | 39 | intergenic (+41/+34) | prpD/acnB | 2‑methylcitrate dehydratase/aconitate hydratase B |
| Reads supporting (aligned to +/- strand): ref base C (16/17); new base A (4/2); total (20/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.70e-01 | |||||||||||
CCGGCAGCGGTGTCAGCAGGTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGATGTCTTTCGCG > NC_002947/2669580‑2669865 | ccGGCAGCGGTGTCAGCAGGTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCttt < 1:724759/150‑1 (MQ=255) ggTGTCAGCAGGTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACaa < 1:332384/150‑1 (MQ=255) ggTGTCAGCAGGTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACaa < 1:503658/150‑1 (MQ=255) gtgtCAGCAGGTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCGCAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAAc < 1:702209/150‑1 (MQ=255) atgTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACt < 1:672690/148‑1 (MQ=255) cagcagAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCggg > 2:653765/1‑150 (MQ=255) aaGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTg < 1:118288/150‑1 (MQ=255) aaGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTg < 1:268623/150‑1 (MQ=255) gAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTg > 1:549402/1‑150 (MQ=255) tgtgCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTc > 1:104674/1‑150 (MQ=255) tgCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTcgc < 2:518738/150‑1 (MQ=255) cacaGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACg < 2:446351/109‑1 (MQ=255) cacaGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACg > 1:446351/1‑109 (MQ=255) cacaGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGc > 2:69687/1‑110 (MQ=255) cacaGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGc < 1:69687/110‑1 (MQ=255) gTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTc > 2:491088/1‑150 (MQ=255) aCTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCt > 1:185963/1‑150 (MQ=255) aaGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGt > 1:369150/1‑137 (MQ=255) aaGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGt < 2:369150/137‑1 (MQ=255) cggccggcAATGTACCAAACAACAAAGCCCCGTCATCGCTGCCGGGGTTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGTGATCTTTGCTTTGGCTGCCGCTTCGCGGATCTCGGCAATCTGGTCCAAGCTCAGGTAGCg < 2:248337/150‑1 (MQ=255) gccggcACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGAGCAATGCAGTCAACCTGTAACTCAGCGTACGGCTAAACCACCGGGATCTTGGCGTTTGTTACCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGt > 1:511878/1‑150 (MQ=255) ccagcACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCgg < 1:213790/145‑1 (MQ=255) ccagcACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCgg > 2:213790/4‑148 (MQ=255) gttgtaaacaaAGCCCCGGCAGCGATGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAg > 1:188043/7‑150 (MQ=255) aaaGCCCCGGCAGCGATGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAAc > 1:57154/1‑98 (MQ=255) aaaGCCCCGGCAGCGATGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAAc < 2:57154/98‑1 (MQ=255) gCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTcgcg < 1:211411/91‑1 (MQ=255) gCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTcgcg > 2:211411/1‑91 (MQ=255) gCCCCGGCAGCGATGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGa > 1:728439/1‑150 (MQ=255) gCCCCGGCAGCGATGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGa < 2:188043/150‑1 (MQ=255) ccccGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGAt > 1:299140/1‑150 (MQ=255) ccccGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAACTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGAt > 1:350265/1‑150 (MQ=255) ccGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGATGt < 1:491088/150‑1 (MQ=255) ccGGCAGCGATGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGATGt > 1:330483/1‑150 (MQ=255) cGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGt < 1:374885/143‑1 (MQ=255) cGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGGCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGt > 2:374885/1‑143 (MQ=255) gccGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGt > 2:577863/3‑67 (MQ=255) gccGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGt < 1:577863/65‑1 (MQ=255) gCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGATGTCTTTcgcg > 1:183462/1‑150 (MQ=255) | CCGGCAGCGGTGTCAGCAGGTTTTCGAACTGTGCAAGGACCAGCAGAAGCTGGAAGGCACGGCTGTGCACAGGTTCGTGGACTTGTTTGTGATATGAAGCGGCCGGCACAGGCCCAAACAACAAAGCCCCGGCATCGCTGCCGGGGCTTTGTTTACAACCTGTAACTCAGCTTACGCCTGAACCACCGGGATCTTGGCGTTGGCTGCCGCTTCGCGGAACTCGGCGATCTGGTCGAAGCTCAGGTAGCGGTAAACGTCGGCAGCCATGCTGTCGATGTCTTTCGCG > NC_002947/2669580‑2669865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |