| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,910,906 | A→T | 16.0% | intergenic (‑426/‑118) | aprDA ← / → PP_2561 | alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,910,906 | 0 | A | T | 16.0% | 55.4 / 5.9 | 25 | intergenic (‑426/‑118) | aprDA/PP_2561 | alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin |
| Reads supporting (aligned to +/- strand): ref base A (11/10); new base T (2/2); total (13/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.72e-01 | |||||||||||
TCGGGGCCCTGTGCGAGCTGGGATCGATGCACGTGCGTTACACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAGGGCAACTGCAATGGCCAATTTCAGCAAGTCGGACCTTGA > NC_002947/2910785‑2911052 | tCGGGGCCCTGTGCGAGCTGGGATCGATGCACGTGCGTTACACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACAccc > 1:57101/1‑150 (MQ=255) tgCGAGCTGGGATAGATGCACGTGAGATAAACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCt > 1:525888/1‑150 (MQ=255) ggATCGATGCACGTGCGTTACACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTc > 1:746162/1‑150 (MQ=255) gTGCGTTACACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTgg < 2:73595/150‑1 (MQ=255) ttACACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGcgcg < 2:57101/150‑1 (MQ=255) acCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACTCGTGtgctgaaa < 2:699745/90‑4 (MQ=255) acCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGACAAGAAGAGGTCAGAGCTTTCAGCACTCGTGtgctgaaa > 1:699745/1‑87 (MQ=255) gcACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACTCGTGtgctgaaag > 2:593835/1‑78 (MQ=255) gcACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACTCGTGtgctgaaag < 1:593835/82‑5 (MQ=255) gcACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGt > 2:686216/1‑150 (MQ=255) cACGGTTTACAGGGCCCCTCCGCAACGGGTTGCCTGCTTGCCAAGAAGCGGTGAGCGCTGTCAGCACACGAGTGCGGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTTACTGGGCGCGGGAAGGACCCTGtt > 1:206949/1‑150 (MQ=255) cACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGtt > 1:305620/1‑150 (MQ=255) ggTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGcc < 1:686216/150‑1 (MQ=255) gCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCAtc < 2:525888/150‑1 (MQ=255) cTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCg > 2:485093/1‑150 (MQ=255) gTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAgg < 1:485093/150‑1 (MQ=255) tGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAggg < 2:704870/150‑1 (MQ=255) ccTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAGGGCa > 1:482760/1‑150 (MQ=255) gcAGAGCTTGCAGCACACGAGTGCGGCGCGACTGAGCCCGGTACAGCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAGGGCAACTGCAATGGCCAATTTCa < 2:206949/149‑1 (MQ=255) agagCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTTGGCGCGGGAAGGACCCTGTTGCCCtgt > 1:247305/1‑104 (MQ=255) agagCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTTGGCGCGGGAAGGACCCTGTTGCCCtgt < 2:247305/104‑1 (MQ=255) agagCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAGGGCAACTGCAATGGCCAATTTCAGc < 2:482760/150‑1 (MQ=255) cacGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGAc < 2:676289/78‑1 (MQ=255) cacGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGAc > 1:676289/1‑78 (MQ=255) acGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAGGGCAACTGCAATGGCCAATTTCAGCACGTCGGACCTTGa > 2:194017/1‑150 (MQ=255) | TCGGGGCCCTGTGCGAGCTGGGATCGATGCACGTGCGTTACACCTGTTGCGCACGGTTTACAGGGCCCCTCCGCAACGGGGTGCCTGCTTGCCAAGAAGAGGTCAGAGCTTTCAGCACACGAGTGCTGCGCTACTGAGCCCGGTACACCCAACCAGATTCTGCGCACGTCAACACTGACTGGGCGCGGGAAGGACCCTGTTGCCCTGTGTCATCTCCGGACAGATCGAGGGCAACTGCAATGGCCAATTTCAGCAAGTCGGACCTTGA > NC_002947/2910785‑2911052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |