| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,044,525 | G→A | 28.6% | P8P (CCG→CCA) | pstC → | phosphate ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,044,525 | 0 | G | A | 28.6% | 13.7 / 5.8 | 14 | P8P (CCG→CCA) | pstC | phosphate ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (6/4); new base A (2/2); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.96e-01 | |||||||||||
CCGCCAACATCCAGTAATACCCAGGCGCTCCCGGTATTGGCATGAAGCCATGCCGGGGGTGTTTGTCCCTTGTCCCGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGTGGTGCTGGTGCTGGCGCTGGTCTTCGCGCTGGTCTACGAAGTCGGCCGCAAGGCACTGCCTGG > NC_002947/3044415‑3044674 | ccGCCAACATCCAGTAATACCCAGGCGCTCCCGGTATTGGCATGAAGCCATGCCGGGGGTGTTTGTCCCTTGTCCCGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGaaa < 1:562774/150‑1 (MQ=255) tCCAGTAATACCCAGGCGCTCCCGGTATTGGCATGAAGCCATGCCGGGGGTGTTTGTCCCTTGTCCCGGAACTCGCCAATTAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTg < 2:312761/150‑1 (MQ=255) ccATGCCGGGGGTGTTTGTCCCTTGTCCCGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTACGCGCATTGGCgt > 1:87625/1‑150 (MQ=255) gggggTGTTTGTCCCTTGTCCCGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGtggtgctg < 1:487878/150‑1 (MQ=255) tttGTCCCTTGTCCCGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCACTCCGCGTCTGCGAAAGACTTTCTGGCCGACCGCGCTGGGGGTGCGCTTGCGCTCATTGGCGTGGtgctggtgctgg > 1:167557/1‑150 (MQ=255) gtcccttgtcccGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGTGGTGCTGGTGCTGgcgc > 1:710466/1‑150 (MQ=255) ccttgtcccGGACCTCGCCAATGAACACTCCTTTTGCCATACCGGACAACCGCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGGATGTGGATCTTGGTGGTGCTGGCGCTgg > 2:174086/1‑150 (MQ=255) ggAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGGGTGGTGAGGGTGCTGGCGCTGGTCTTCgcgc > 1:577945/1‑150 (MQ=255) tCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGc > 1:109196/1‑114 (MQ=255) tCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGc < 2:109196/114‑1 (MQ=255) aaTGAACACTCCTTTTGCCATACCAGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGTGGTGCTGGTGCTGGCGCTGGTCTTCGCGCTGGTCTACGa > 2:655485/1‑150 (MQ=255) aaTGAACACTCCTTTTGCCATACCAGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGTGGTGCTGGTGCTGGCGCTGGTCTTCGCGCTGGTCTACGa > 2:655590/1‑150 (MQ=255) tACCAGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTGGCGCGCATTGGCTGGGGGCTGGTGCTGGCGCTGGTCTTCGCGCTGGTCTACGAAGTCGGCCGCAAGGCACTGc < 1:655485/150‑1 (MQ=255) tACCAGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCCGGCGCGCATTGGCGGGGTTCGGTTGCTGGCGCTGGTCTTCGCGCTGGTCTACGAAGTCGGCCGCAAGGCACTGc < 1:655590/150‑1 (MQ=255) ggATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGTGGTGCTGGTGCTGGCGCTGGTCTTCGCGCTGGTCTACGAAGTCGGCCGCAAGGCACTGCCTgg > 2:440352/1‑150 (MQ=255) | CCGCCAACATCCAGTAATACCCAGGCGCTCCCGGTATTGGCATGAAGCCATGCCGGGGGTGTTTGTCCCTTGTCCCGGAACTCGCCAATGAACACTCCTTTTGCCATACCGGATAACCCCGACTCCGCGTGCCAGCCACCGTCTGCGAAAGACTTTCTGGTCGATCGCACCTTCCGTGCGCTTGCGCGCATTGGCGTGGTGCTGGTGCTGGCGCTGGTCTTCGCGCTGGTCTACGAAGTCGGCCGCAAGGCACTGCCTGG > NC_002947/3044415‑3044674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |