| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 38.0% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 38.0% | 72.0 / 56.5 | 63 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (14/24); new base C (10/13); total (25/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
CGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAC > NC_002947/196158‑196453 | cGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATc < 1:101718/150‑1 (MQ=255) ggTAATTTCGAGCAACTGACGCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCTGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc < 2:185254/150‑1 (MQ=255) aTTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGa < 1:102457/150‑1 (MQ=255) tttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 1:13041/1‑150 (MQ=255) aaCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGa < 2:13041/150‑1 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 2:506110/150‑1 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 1:516487/1‑150 (MQ=255) gAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCt < 2:441303/150‑1 (MQ=255) tcccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAGCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt < 1:462824/149‑1 (MQ=255) cccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGT‑TCGGTTGTGTGTCGTGAGCACTTACACCGTGAACATGAGCAAAACTGCCCAGACGCCGGTGACAGTGACCCTGTc > 1:505640/1‑150 (MQ=14) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTAGACACCACTACCGCGAACCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCGATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc > 2:401955/1‑150 (MQ=255) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTg > 1:255112/1‑116 (MQ=38) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTg < 2:255112/116‑1 (MQ=38) tCACACAACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc < 1:407032/150‑1 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 1:184394/1‑150 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa < 2:166791/120‑1 (MQ=255) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 1:166791/1‑120 (MQ=255) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:26812/150‑1 (MQ=40) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 1:331803/150‑1 (MQ=40) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:68081/142‑1 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa > 1:68081/1‑142 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa < 2:98480/150‑1 (MQ=255) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg > 2:394436/1‑150 (MQ=39) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg > 1:359452/1‑150 (MQ=39) aCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc < 1:420776/150‑1 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 1:261145/106‑1 (MQ=32) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 2:261145/1‑106 (MQ=33) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 2:655186/150‑1 (MQ=35) gcgACCCTGACGGCGAGACCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 2:229101/150‑1 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc < 2:681173/150‑1 (MQ=11) tGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 1:483189/150‑1 (MQ=11) gACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGATGCCGCCAAAACCCAGCGCAGCGCCCATTCCCa < 2:184394/150‑1 (MQ=11) gACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 1:634316/1‑150 (MQ=35) gACGGCGAGCCCGTCGGTCACCGAAA‑ATAACTTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 1:564805/150‑1 (MQ=11) cGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa < 1:639874/150‑1 (MQ=11) cGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGAccc < 1:557139/150‑1 (MQ=35) cGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAccc > 1:55158/1‑150 (MQ=255) gTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGaa > 1:508012/1‑150 (MQ=11) tCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 1:741199/150‑1 (MQ=11) ggTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 1:491986/127‑1 (MQ=255) ggTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc > 2:491986/1‑127 (MQ=255) gTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 2:55158/150‑1 (MQ=255) tCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg > 2:557252/1‑150 (MQ=35) cACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCTGTGACGGGGACCGTGTCCAACGGCCAAGCGAGTACCGTTGAAGCCGGCAGAACCCAGGGCAGCGTCGACTACAAAACCCCGGCGAATGACGt > 2:618177/1‑150 (MQ=11) ccGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCg > 2:702723/1‑140 (MQ=37) ccGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCg < 1:702723/140‑1 (MQ=37) ccGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCATGACCCTGTCTAAGGGCCAAACGCTTACCGTTGAAGCCGGCAAAACCCATGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCt > 1:498643/1‑150 (MQ=11) cGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGCGCCTGTCCAACGGCCAAACGATTACCGTTGGAGCCGGCCAAACCCAGGGCAGCGTCGACGTCCAGACCCGCGCGAATGCCGTCTa > 1:225344/1‑150 (MQ=11) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc > 1:312451/1‑102 (MQ=255) gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt > 1:100113/1‑150 (MQ=11) gATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:382883/150‑1 (MQ=11) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 1:267459/1‑52 (MQ=38) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa < 2:267459/52‑1 (MQ=38) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACTCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 2:502730/150‑1 (MQ=11) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg < 1:557252/150‑1 (MQ=35) acCGTGACCCTGAGCAAGCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAGGCCGGCAAAACCCTGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc < 2:640201/150‑2 (MQ=11) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc > 2:86439/1‑99 (MQ=11) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 1:86439/99‑1 (MQ=11) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 1:729835/105‑1 (MQ=11) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa > 2:729835/1‑105 (MQ=11) gACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc < 1:394436/150‑1 (MQ=38) cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 2:505640/150‑1 (MQ=38) aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc < 2:632487/150‑1 (MQ=17) | CGGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAG‑GCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAC > NC_002947/196158‑196453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |