| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,871,305 | C→G | 10.8% | P164R (CCC→CGC) ‡ | xdhC → | xanthine dehydrogenase accessory factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,871,305 | 0 | C | G | 10.8% | 108.4 / 6.0 | 37 | P164R (CCC→CGC) ‡ | xdhC | xanthine dehydrogenase accessory factor |
| Reads supporting (aligned to +/- strand): ref base C (19/14); new base G (2/2); total (21/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
TGGTACCCTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGTCAAGTTCGAGCACCGCCTGCGCGAACGAG > NC_002947/4871167‑4871454 | tGGTACCCTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGGGCGGCAggtca > 1:18333/1‑145 (MQ=255)tGGTACCCTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGGGCGGCAggtca < 2:18333/149‑5 (MQ=255) tACCCTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCa > 2:448920/1‑150 (MQ=255) cccTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATc < 1:119695/150‑1 (MQ=255) cccTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATc < 2:264851/150‑1 (MQ=255) cTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCAt > 2:566323/1‑147 (MQ=255) cTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCAt < 1:566323/147‑1 (MQ=255) gccgcGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGAcc > 2:243779/1‑150 (MQ=255) gCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGc < 2:533995/150‑1 (MQ=255) gcTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTgg > 2:79258/1‑150 (MQ=255) tGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGaa < 1:120531/150‑1 (MQ=255) tggcgTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGGGCGGCAggt > 2:404861/3‑98 (MQ=255) tCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGGGCGGCAggt < 1:404861/100‑3 (MQ=255) tCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTgcc > 2:521156/1‑150 (MQ=255) tGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCAt > 1:26971/1‑150 (MQ=255) aGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCa > 2:99598/1‑150 (MQ=255) aGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCa < 1:327634/150‑1 (MQ=255) ggAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCaa < 1:79258/150‑1 (MQ=255) tCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCa > 1:246479/1‑150 (MQ=255) cccGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAAc > 1:734655/1‑150 (MQ=255) ccGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGCCCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACg > 1:664137/1‑150 (MQ=255) ccGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACg > 2:693418/1‑150 (MQ=255) gAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGAt < 1:243779/150‑1 (MQ=255) aTCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCAcc > 1:648743/1‑150 (MQ=255) aaTGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCAGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTc > 1:62474/1‑150 (MQ=255) aTGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCg < 1:424851/150‑1 (MQ=255) cAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAactga < 2:324052/101‑1 (MQ=255) cAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAactga > 1:324052/1‑101 (MQ=255) aaGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAaccac < 1:686952/81‑1 (MQ=255) aaGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAaccac > 2:686952/1‑81 (MQ=255) aaGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGc < 2:26971/150‑1 (MQ=255) tcAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGa > 1:171632/1‑150 (MQ=255) aCCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGt < 1:351698/150‑1 (MQ=255) ccGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGAATGCCGCAATTCTTGATCTGAACAACGTCAGCTGCCACGGCCTCATCGGCTCGAAGACCAAACGGGTc > 2:351698/1‑150 (MQ=255) ggTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGTCaa < 1:521156/150‑1 (MQ=255) gaAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGTCAAGTTCGAg > 2:397567/1‑150 (MQ=255) gCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGAAACGATGTTAGCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGTCAAGTTCGAGCACCGc > 1:464615/1‑150 (MQ=255) ccGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGTCAAGTTCGAGCACCGCCTGCGCGAACGAg < 1:99598/150‑1 (MQ=255) | TGGTACCCTTGCTCGCCGCGCTCCCCTGCCGGGTGCGCTGGATCGACTCGCGTGAACAGGAATTCCCCGAACTCATCCCCAATGGGGTGACCAAGGTCGTCAGTGAGGAACCGGTCGACGAAGTCGCTGACCTGCCGCCCGGCAGCTACTGCATCGTCATGACCCACAACCACCAGCTCGACCTGGAACTGACTGCCGCCATTCTCAAGCGCAACGATTTCACCTGGTTCGGCCTGATCGGCTCGAAGACCAAACGGGTCAAGTTCGAGCACCGCCTGCGCGAACGAG > NC_002947/4871167‑4871454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |