| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,137,813 | A→G | 15.4% | intergenic (‑164/‑49) | PP_4522 ← / → PP_4523 | LysR family transcriptional regulator/agmatinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,137,813 | 0 | A | G | 15.4% | 58.6 / 3.7 | 26 | intergenic (‑164/‑49) | PP_4522/PP_4523 | LysR family transcriptional regulator/agmatinase |
| Reads supporting (aligned to +/- strand): ref base A (9/13); new base G (2/2); total (11/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
TGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGAAATGCCGCGTTTCGGCGGCATCGCCACCATGCTCCGCCTCC > NC_002947/5137675‑5137952 | tgCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCgcggc > 1:631995/1‑150 (MQ=255) gcgcAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCggcggc > 1:291693/1‑150 (MQ=255) tGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCAGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGaac > 1:528867/1‑150 (MQ=255) ctACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGaacaaac < 1:478230/150‑1 (MQ=255) ccGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAGTGGCGCGCGGCGGCACAGGTTCGaacaaa < 2:254955/145‑1 (MQ=255) ccGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAGTGGCGCGCGGCGGCACAGGTTCGaacaaa > 1:254955/1‑145 (MQ=255) tttGGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACAcaacaacc < 1:256021/150‑3 (MQ=255) gaaTTTCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACtga > 2:151516/2‑150 (MQ=255) tCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAATAATCGACCGACTGATGAg < 2:334695/150‑1 (MQ=255) tCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAg < 2:291693/150‑1 (MQ=255) ccTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCATGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAAAACAACAATCGACCGACTGATGAgg < 2:339447/150‑1 (MQ=255) cTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCAcc < 1:380679/150‑1 (MQ=255) tATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGa < 1:151516/150‑1 (MQ=255) tttGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACa > 1:115957/1‑150 (MQ=255) ggTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGActc < 2:631995/150‑1 (MQ=255) gTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGActct > 1:549499/1‑150 (MQ=255) aGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTcc < 2:281900/150‑1 (MQ=255) ggCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAGTGGCGCGCTGCGGCACAGGTTCGAACAAACACAACAATcga > 1:92321/1‑101 (MQ=255) ggCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAGTGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATcga < 2:92321/101‑1 (MQ=255) gCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGAAATGc > 1:185497/1‑150 (MQ=255) ccGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGAAATGCCGCGTTTcgg < 2:185497/150‑1 (MQ=255) aaTGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACAcaacaa < 2:306970/70‑1 (MQ=255) aaTGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACAcaacaa > 1:306970/1‑70 (MQ=255) ccACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGAAATGCCGCGTTTCGGCGGCATCGCCACCATGCTCCGCCTcc < 2:115957/150‑1 (MQ=255) acGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGa > 1:711159/1‑105 (MQ=255) acGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGa < 2:711159/105‑1 (MQ=255) | TGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGACTGATGAGGCCCACCGTGGACAAGACTCTCCACCAACCACTGGGCGGCAACGAAATGCCGCGTTTCGGCGGCATCGCCACCATGCTCCGCCTCC > NC_002947/5137675‑5137952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |