| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,009,200 | T→C | 19.5% | intergenic (+41/+41) | norM → / ← PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,009,200 | 0 | T | C | 19.5% | 38.0 / 2.4 | 20 | intergenic (+41/+41) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (9/7); new base C (2/2); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGG > NC_002947/6009070‑6009340 | gcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGTCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGc < 1:717871/150‑1 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGt > 2:658584/1‑148 (MQ=25) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGt < 1:658584/148‑1 (MQ=25) ttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCtgt > 2:93633/1‑128 (MQ=255) ttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCtgt < 1:93633/128‑1 (MQ=255) gCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGt < 1:97329/127‑1 (MQ=255) gCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGt > 2:97329/1‑127 (MQ=255) aaCGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGt > 1:555642/1‑119 (MQ=18) aaCGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAAT‑CCTGTGGGAGCGGGCGt < 2:555642/119‑1 (MQ=18) aaGCTGCTGTTTCGGCCTGACTTCCGTGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTgcg < 1:609966/64‑1 (MQ=255) aaGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTgcg > 2:609966/1‑64 (MQ=255) gCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCggg < 1:619179/69‑1 (MQ=255) gCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCggg > 2:619179/1‑69 (MQ=255) gCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAg < 2:217616/68‑1 (MQ=255) gCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAg > 1:217616/1‑68 (MQ=255) cccGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTg > 2:529443/1‑150 (MQ=255) tCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCt > 1:138212/1‑150 (MQ=255) ccACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTgg > 1:440277/1‑150 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGcc < 2:232428/138‑1 (MQ=255) aca‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGcc > 1:232428/1‑138 (MQ=255) | GCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACA‑GGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGG > NC_002947/6009070‑6009340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |