| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5099995 = | 22 (0.760) | 4 (0.170) | 4/214 | 2.9 | 19.6% | intergenic (+33/+120) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | 5100077 = | 15 (0.640) | intergenic (+115/+38) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5100166‑5099995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggccttgtgtcgcgaAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAA > NC_002947/5100077‑5100212 GACAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTG < 2:161192/150‑1 aaAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGTGACTGCGTTGCAGTCCTTTGGCGACACAAGGGCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGT < 1:111752/148‑1 gatcTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTG < 1:226240/146‑1 AATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGG < 2:285473/150‑1 CCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGATATGGCTGAGCGCGTTGTCTGTGtagatc > 2:226240/1‑144 GGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGC > 1:584277/1‑150 AAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTG > 1:9852/1‑129 AAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTG < 2:9852/129‑1 CTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACTCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTC < 2:99041/138‑1 CTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTC > 1:99041/1‑138 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAAC < 1:270686/138‑1 CCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAAC > 2:270686/1‑138 GTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGAC > 2:379383/1‑150 AGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTG > 2:677546/1‑150 CGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGG < 1:379383/150‑1 GCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAA < 2:127207/150‑1 AAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTC < 1:463936/91‑1 AAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTC > 2:463936/1‑91 GACAATTGCCAACAAGTTGAGGGATTACTCGCTTAACAAGTCGGCGGATTAGTTGTTGGTCAAAGAACCTGGGACTGCGTTGCAGTCCTTTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5100166‑5099995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggccttgtgtcgcgaAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAATCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAA > NC_002947/5100077‑5100212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |