New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5759460 =	11 (0.380)	7 (0.320)	5/200	2.4	55.3%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759552 =	3 (0.140)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAA  >  NC_002947/5759316‑5759542                                                                                                                                                 |                                                                                   gcgctgatgctgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGc                                                                               >  2:723298‑M1/145‑150 (MQ=255)       aGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTc                                                                         <  1:634605/150‑1 (MQ=255)        catcagcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTcg                                                                        <  1:187469‑M1/13‑1 (MQ=255)         ccTGCCGGCCGAGCATGGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTcgc                                                                       <  1:107686/150‑1 (MQ=255)         ccTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTcgc                                                                       >  2:523535/1‑150 (MQ=255)          cTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTcgcg                                                                      <  2:623070/150‑1 (MQ=255)           tgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCgg                                                                     >  2:705319‑M1/135‑150 (MQ=255)           ggcgggccgAGCATCGCTTGCGCCTGCCGATGCGGACGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGCCCTCTTCGCgg                                                                     <  2:3468/146‑1 (MQ=255)                  ggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAAcc                                                              <  1:262306‑M1/23‑1 (MQ=255)                         ttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCgg                                                                                 >  1:139383‑M1/121‑124 (MQ=255)                         ttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCgg                                                                                 <  2:139383‑M1/4‑1 (MQ=255)                           cgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTAc                                                     >  2:262306‑M1/119‑150 (MQ=255)                                  ctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGc                                                           >  2:253070‑M1/112‑137 (MQ=255)                                  ctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGc                                                           <  1:253070‑M1/26‑1 (MQ=255)                                                 gggTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCaa                               <  1:523535/150‑1 (MQ=255)                                                                 aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGa                   >  2:322296/1‑146 (MQ=255)                                                                 aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGa                   <  1:322296/146‑1 (MQ=255)                                                                  agcgggtgaagcgcctactgtgcagtaattactgccgttttcaagaaagcgcctcttggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg              >  2:313061‑M1/80‑150 (MQ=255)                                                                    tGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGtt            >  2:629876/1‑150 (MQ=255)                                                                        cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAcc        <  1:251230/150‑1 (MQ=255)                                                                              ggTGGCGGTGACGGTCTATGAGGTGTGGCGGCAGAACGGGTTTGCCGGGAGCTGCTGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGaa  <  2:710124/150‑1 (MQ=255)                                                                                        cagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAAccc                                                             >  1:460287‑M1/58‑81 (MQ=255)                                                                                        cagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAAccc                                                             <  2:460287‑M1/24‑1 (MQ=255)                                                                                                  tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg               <  1:210225‑M1/70‑1 (MQ=255)                                                                                                  tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg               >  2:210225‑M1/48‑117 (MQ=255)                                                                                                  tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCcgc     >  2:375918‑M1/48‑127 (MQ=255)                                                                                                  tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCcgc     <  1:375918‑M1/80‑1 (MQ=255)                                                                                                        tttcaagaaagcgcctatcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAATCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg              <  2:365577‑M1/71‑1 (MQ=255)                                                                                                        tttcaagaaagcgcctatcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAATCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg              >  1:365577‑M1/42‑112 (MQ=255)                                                                                                                                                 |                                                                                   CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAA  >  NC_002947/5759316‑5759542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.