New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 90344	34 (1.180)	7 (0.250)	7/260	2.5	15.8%	intergenic (+19/+103)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	= 90427	41 (1.440)					intergenic (+102/+20)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TGTGCCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAG  >  NC_002947/90198‑90488                                                                                                                                                   |                                                                                                                                                 tgtgCCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACCTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATATTGGGTCCGCTTTGCGGc                                                                                                                                               >  2:163097/1‑150 (MQ=255)                aGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCCTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAg                                                                                                                                <  1:410698/150‑1 (MQ=255)                 ggggAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAgg                                                                                                                               <  1:256254/150‑1 (MQ=255)                           cgcTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCcac                                                                                                                     >  2:435598/1‑150 (MQ=255)                                   aCGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCAc                                                                                                             >  2:195563/1‑150 (MQ=255)                                          tATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCacac                                                                                                      <  1:435598/150‑1 (MQ=255)                                               cGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCggcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtg                                                                                                 >  2:389495‑M1/1‑101 (MQ=255)                                               cGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCgg                                                                                                 >  2:637988/1‑150 (MQ=255)                                                      ttACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCagcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtgccactgt                                                                                          >  1:660109‑M1/1‑94 (MQ=255)                                                      ttACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCAtgt                                                                                          >  2:266828/1‑150 (MQ=255)                                                        aCCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTgg                                                                                        <  1:637988/150‑1 (MQ=255)                                                           gccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAg                                                                                     >  2:516206/1‑150 (MQ=255)                                                            ccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCggcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtgccactgtgggagc                                                                                    <  1:389495‑M1/150‑63 (MQ=255)                                                            ccgcGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGc                                                                                    <  2:497430/150‑1 (MQ=255)                                                             cgcgCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCggcccatcgcgacacaaggccgctcccacatgggccggcgtgtgcagtgccactgtgggagcg                                                                                   <  2:427412‑M1/150‑64 (MQ=255)                                                               cgcAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGc                                                                                 <  1:643622/150‑1 (MQ=255)                                                                                 ttGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCagcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtgccactgtggga                                                                                      >  2:89772‑M1/1‑67 (MQ=255)                                                                                 ttGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCagcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtgccactgtggga                                                                                      <  1:89772‑M1/127‑61 (MQ=255)                                                                                      cGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                          <  1:195563/150‑1 (MQ=255)                                                                                       gAGCGGTTTGTGGATTGGTTGGAGCAGGAGAGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAAGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcag                                                         <  2:497755/150‑1 (MQ=255)                                                                                        aGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagc                                                        >  1:612211/1‑150 (MQ=255)                                                                                         gCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCagcccatcgcgacgcaaggccgctcccacatgggccggcgtgtgcagtgccactgtgggagcggccttgtgtcgcgatgggccgcaaagcg                                                       <  2:660109‑M1/150‑92 (MQ=255)                                                                                            gTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcc                                                    >  2:376585/1‑150 (MQ=255)                                                                                              ttGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGcccc                                                  <  1:516206/150‑1 (MQ=255)                                                                                                     ttggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCTATGGGCTGCGCAGCAGCCCCGGCAATc                                           <  1:561327/150‑1 (MQ=255)                                                                                                     ttggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATAGGCTGCGCAGCAGCCCCCGCAATc                                           >  1:150727/1‑150 (MQ=255)                                                                                                       ggttggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTa                                         <  1:266828/150‑1 (MQ=255)                                                                                                          tggAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGAc                                      <  1:405562/150‑1 (MQ=255)                                                                                                              gCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagc                                                        <  1:641094/128‑1 (MQ=255)                                                                                                              gCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgcagc                                                        >  2:641094/1‑128 (MQ=255)                                                                                                              gCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                          >  2:204153/1‑126 (MQ=255)                                                                                                              gCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCgca                                                          <  1:204153/126‑1 (MQ=255)                                                                                                              gCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACg                                  >  1:370446/1‑150 (MQ=255)                                                                                                                        aGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGt                        >  1:542275/1‑150 (MQ=255)                                                                                                                            tttGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTgctc                    >  2:116977/1‑150 (MQ=255)                                                                                                                                 gaTTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTcc               <  1:286626/150‑1 (MQ=255)                                                                                                                                   ttttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGc                                                                                 >  2:50569/1‑82 (MQ=255)                                                                                                                                   ttttGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGc                                                                                 <  1:50569/82‑1 (MQ=255)                                                                                                                                           ccGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtc     <  2:542275/150‑1 (MQ=255)                                                                                                                                           ccGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCAGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGAGGTTGCTCCGGGGCAAGtc     >  2:660076/1‑150 (MQ=39)                                                                                                                                            cGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTgcaaagcggccccaaaatctcaaaggctgcgctcctgctccaaccaatccacaaaccgc    <  2:660109‑M2/150‑60 (MQ=255)                                                                                                                                              cTTTGGGGTCCATCGCGACACAAGGCCGCTCCCACAGTGGCACAGCCCTTTTCGGCCCATGTGGGAGCGGCAATGAGTCTCGATGGGCTGTGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGtccag  <  1:163097/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TGTGCCGGCCGCTGGAGGGGAGTTTGCGCTCGGAACGCGGCTATTACGTAGTCTTACCGCCGCGCAAGCGGCGTGGGGCGTTGATCGAGCGGTTTGTGGATTGGTTGGAGCAGGAGCGCAGCCTTTGAGATTTTGGGGCCGCTTTGCGGCCCATCGCGACACAAGGCCGCTCCCACAGTGGCACTGCACACGCCGGCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAG  >  NC_002947/90198‑90488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.