New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1114875 =	21 (0.730)	5 (0.210)	5/214	2.5	23.8%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114951 =	15 (0.640)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

CTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGC  >  NC_002947/1114826‑1115091                                                                                                                              |                                                                                                                                             cTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAAc                                                                                                                      <  1:437509/150‑1 (MQ=255)  tataCGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACg                                                                                                                     <  1:516955/150‑1 (MQ=255)                 ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACATGGCCGCGCGCACAGGGGGGTCCCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGAtt                                                                                                      >  2:209743/1‑150 (MQ=38)                 ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGAtt                                                                                                      >  1:398961/1‑150 (MQ=255)                 ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGAtt                                                                                                      >  2:537929/1‑150 (MQ=255)                                  gctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTCTCGGTGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCcgc                                                                                     <  2:603064/150‑1 (MQ=255)                                       gcAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCAtg                                                                                <  1:244328/150‑1 (MQ=255)                                                     ACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGt                                                                  <  1:374006‑M1/150‑1 (MQ=255)                                                       ACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGc                                                                                                                            <  1:407503‑M1/90‑1 (MQ=255)                                                       ACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGc                                                                                                                            >  2:407503‑M1/1‑90 (MQ=255)                                                         AAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCa                                                                                  >  2:76887‑M1/1‑130 (MQ=255)                                                         AAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCa                                                                                  <  1:76887‑M1/130‑1 (MQ=255)                                                            gccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGcccc                                                                                                                         <  2:21869‑M2/22‑1 (MQ=255)                                                            gccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGcccc                                                                                                                         >  1:21869‑M2/67‑88 (MQ=255)                                                               GCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGc                                                                                                                               <  1:704168‑M1/79‑1 (MQ=255)                                                               GCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGc                                                                                                                               >  2:704168‑M1/1‑79 (MQ=255)                                                                 tcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCcgcg                                                                                    >  1:551518‑M2/62‑120 (MQ=255)                                                                 tcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCcgcg                                                                                    <  2:551518‑M2/59‑1 (MQ=255)                                                                 TCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCt                                                      <  1:300911‑M1/150‑1 (MQ=255)                                                                     acaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                                                  >  1:241632‑M2/58‑150 (MQ=255)                                                                     ACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                                                  <  2:352029‑M1/150‑1 (MQ=255)                                                                       AGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAggg                                                         >  1:473974‑M1/1‑141 (MQ=255)                                                                       AGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAggg                                                         <  2:473974‑M1/141‑1 (MQ=255)                                                                           gggTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGTGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAgg                                                          <  1:704841/136‑1 (MQ=255)                                                                           gggTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGt                                                                       >  1:225888/1‑123 (MQ=255)                                                                           gggTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGt                                                                       <  2:225888/123‑1 (MQ=255)                                                                           gggTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAgg                                                          >  2:704841/1‑136 (MQ=255)                                                                            ggTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCg                                           <  1:537929/150‑1 (MQ=255)                                                                               ggCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGcc                                        >  2:489417/1‑150 (MQ=255)                                                                                                 gcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTg                                                                                             >  2:411063/1‑79 (MQ=255)                                                                                                 gcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTg                                                                                             <  1:411063/79‑1 (MQ=255)                                                                                                       ctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATc                >  2:240411‑M2/24‑150 (MQ=255)                                                                                                         gtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCAc              >  1:501916‑M2/22‑150 (MQ=255)                                                                                                                     ttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCAGTGAAGTTGGCCAGGGCATGTCTGCACAAGAGTAGCTTGTCGCGTTCCTTCTCGATCACCGCAGGCGGGGc  <  1:489417‑M2/141‑1 (MQ=255)                                                                                                                     ttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGCGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCAGGTGGTTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGc  >  1:401554‑M2/10‑150 (MQ=255)                                                                                                                              |                                                                                                                                             CTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGC  >  NC_002947/1114826‑1115091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.