New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2664051 =	14 (0.480)	4 (0.170)	4/216	2.9	22.6%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664132 =	16 (0.680)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase

AGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGG  >  NC_002947/2663987‑2664278                                                                                                                                                  |                                                                                                                                                   aGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                                                <  1:595346/150‑1 (MQ=255)              gCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCt                                                                                                                                   >  2:255782/1‑150 (MQ=255)                                     cTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTg                                                                                                            >  2:11508/1‑150 (MQ=255)                                                    ccGTTTCCCTTAAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAaca                                                                                             >  1:700997/1‑150 (MQ=255)                                                       tttCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTg                                                                                          <  1:255782/150‑1 (MQ=255)                                                             ttGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGCACGGTGAAACCTTCCGAATCCCTTGACCGAGCCTGATTCCATGCTGAAAACTGccttag                                                                                    >  2:663419/1‑145 (MQ=255)                                                                aGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCat                                                                                                     >  1:136397/1‑130 (MQ=255)                                                                aGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCat                                                                                                     <  2:136397/130‑1 (MQ=255)                                                                      cgggcgtgcccgcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCAcc                                                                           >  1:213296‑M2/77‑150 (MQ=255)                                                                                cgcgaatgcgtcagcaggtgcccagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatg                                                                                                    >  2:119885‑M2/67‑115 (MQ=255)                                                                                cgcgaatgcgtcagcaggtgcatagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatg                                                                                                    <  1:119885‑M2/49‑1 (MQ=255)                                                                                           ccGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGact                                                      >  2:704990/1‑150 (MQ=255)                                                                                              caggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGactact                                                   >  2:339446‑M2/53‑150 (MQ=255)                                                                                               ccTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGCACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACtt                                                  <  1:663419/150‑1 (MQ=255)                                                                                                           tgtgCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCATGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCcgcgc                                      >  2:44911/1‑150 (MQ=255)                                                                                                                aCCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGcggcgg                                 >  2:423055/1‑150 (MQ=255)                                                                                                                 ccTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGac                                                       <  1:621830/127‑1 (MQ=255)                                                                                                                 ccTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGac                                                       >  2:621830/1‑127 (MQ=255)                                                                                                                  ctgctgACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCaa                                                                                >  1:544611/1‑101 (MQ=255)                                                                                                                  ctgctgACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCaa                                                                                <  2:544611/101‑1 (MQ=255)                                                                                                                          cccttcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGAt                       <  1:335974‑M2/126‑1 (MQ=255)                                                                                                                                gcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGcc                 <  2:213296‑M2/132‑1 (MQ=255)                                                                                                                                          ccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTac       >  1:715838‑M2/9‑150 (MQ=255)                                                                                                                                               cccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACgg  <  2:6485‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   AGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGG  >  NC_002947/2663987‑2664278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.