New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5501205 =	32 (1.110)	5 (0.190)	5/242	2.9	14.4%	coding (623/855 nt)	PP_4834	SPFH domain‑containing protein
	?	NC_002947	5501244 =	30 (1.130)					coding (662/855 nt)	PP_4834	SPFH domain‑containing protein
Rejected: Frequency below/above cutoff threshold.

CTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGCCAAGGTGGTGGTGTTGCCGGCTGAC  >  NC_002947/5501096‑5501392                                                                                                                                                      |                                                                                                                                                     cgcgaggttctccatcgcgcccacatagcgttcgcccaataggtacatggccggtacggtctcgttgcccaccgcttccttcaccagcgaaatcgagcgcgccgaggcctCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGa                                                                                                                                                      >  1:278316‑M1/111‑150 (MQ=255) cTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAg                                                                                                                                                     <  2:633775/150‑1 (MQ=255)      cATGGAACGCCAGGCCGCGGCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTCCCGGCGGACACGCTGTACACTGTTGCATATATCAGCCTGGCCGAGGCCTc                                                                                                                                                >  2:79400/1‑150 (MQ=255)              gCCAGGCCGCGGCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCt                                                                                                                                        >  2:615371/1‑150 (MQ=255)                   gCCGCGGCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGAtt                                                                                                                                   >  1:448735/1‑150 (MQ=255)                        ggCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCt                                                                                                                              <  1:481839/150‑1 (MQ=255)                         atagcgttcgcccaataggtacatggccggtacggtctcgttgcccaccgcttccttcaccagcgaaatcgagcgcgccgaggcctCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCt                                                                                                                                                 >  2:329759‑M1/87‑131 (MQ=255)                         atagcgttcgcccaataggtacatggccggtacggtctcgttgcccaccgcttccttcaccagcgaaatcgagcgcgccgaggcctCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCt                                                                                                                                                 <  1:329759‑M1/45‑1 (MQ=255)                              aCGTGCGCGCAAGGCCGACGTTACCCTCGCCTAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTgaa                                                                                                                        <  2:405580/150‑1 (MQ=255)                              aCGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTgaa                                                                                                                        <  1:615371/150‑1 (MQ=255)                              aCGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTgaa                                                                                                                        <  2:448735/150‑1 (MQ=255)                                       cAAGGCCGACGTTCCCCCCGCCGCACGAGGTGAGCGGGCTGCTATCCTAGAAGCAGCGGTCTGGCC‑GCGCTGGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGt                                                                                                               <  1:558988/150‑1 (MQ=255)                                        aaGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTg                                                                                                              <  1:677007/150‑1 (MQ=255)                                         aGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTgaa                                                                                                                        <  1:275859/139‑1 (MQ=255)                                         aGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTgaa                                                                                                                        >  2:275859/1‑139 (MQ=255)                                         aGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTgg                                                                                                             <  2:349093/150‑1 (MQ=255)                                              gACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAAc                                                                                                        >  2:161435/1‑150 (MQ=255)                                                  gtACCCGCCCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGACGCACAGATGAGCCTGGCCGAGCCCTCTGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACgaga                                                                                                    <  1:83883/149‑1 (MQ=255)                                                      ccGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGt                                                                                                >  1:110551/1‑150 (MQ=255)                                                                   gCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTAc                                                                                   <  1:116276/150‑1 (MQ=255)                                                                   gCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CGCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTAc                                                                                   <  2:516399/150‑1 (MQ=255)                                                                           ggcggcGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTggg                                                                           <  2:700305/150‑1 (MQ=255)                                                                               gcgATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGaa                                                                       <  1:681005/150‑1 (MQ=255)                                                                                              gagG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACgaga                                                                                                    >  1:361675/1‑106 (MQ=255)                                                                                              gagG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACgaga                                                                                                    <  2:361675/106‑1 (MQ=255)                                                                                                gg‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGAt                                                      <  1:690120/150‑1 (MQ=255)                                                                                                 g‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCATAAGCGGGCTCGATTGTGCTGGGGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATg                                                     >  1:88814/1‑150 (MQ=255)                                                                                                         aggcctcggccaggctgatctgtgcctcggcatccagcctggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTAt                                                                 <  1:329759‑M2/86‑1 (MQ=255)                                                                                                         aggcctcggccaggctgatctgtgcctcggcatccagcctggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTAt                                                                 >  2:329759‑M2/46‑131 (MQ=255)                                                                                                              tcggccaggctgatctgtgcctcggcatccagcctggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTcgcg                                         >  1:278316‑M2/41‑150 (MQ=255)                                                                                                                   caggctgatctgtgcctcggcatccagcctggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGaa                                                                       >  2:226613‑M2/36‑115 (MQ=255)                                                                                                                   caggctgatctgtgcctcggcatccagcctggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGaa                                                                       <  1:226613‑M2/80‑1 (MQ=255)                                                                                                                    AGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGagc                                   <  2:85654‑M1/150‑1 (MQ=255)                                                                                                                      GCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCTATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGagcag                                 <  1:714773‑M1/150‑1 (MQ=255)                                                                                                                      GCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCggg                                       <  1:642223‑M1/144‑1 (MQ=255)                                                                                                                      GCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCggg                                       >  2:642223‑M1/1‑144 (MQ=255)                                                                                                                            tGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGc                           <  2:394745/150‑1 (MQ=255)                                                                                                                              ccGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGc                                                                                          <  2:483140/85‑1 (MQ=255)                                                                                                                              ccGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGc                                                                                          >  1:483140/1‑85 (MQ=255)                                                                                                                               cGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCACTGccta                        >  1:360188/1‑148 (MQ=255)                                                                                                                                     acaGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGga                                                   >  2:155480/1‑117 (MQ=255)                                                                                                                                     acaGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGga                                                   <  1:155480/117‑1 (MQ=255)                                                                                                                                              gcgcgccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGCCAAGGTGGTGGTGTTGcc         >  1:390583‑M2/9‑150 (MQ=255)                                                                                                                                              cctggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGCCAAGGTGGTGGTGTTGcc         >  2:566091‑M2/9‑150 (MQ=255)                                                                                                                                                tggccgAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGTCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGCCAAGGTGGTGGTGTTGCCgg       <  1:85654‑M2/144‑1 (MQ=255)                                                                                                                                                     gAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGTCAACGAGACCGTACCGGCTATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGCCAAGGTGGTGGTGTTGCCGGCTGAc  <  2:714773‑M2/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGAGCGCAAGGCCGACGTTACCCGCGCCGAAGGGGCCAAGCAGGCGGCGATCCTCGAAGCAGAGG‑CTCGCCTGCAGGCGGCCAGGCTGGATGCCGAGGCACAGATCAGCCTGGCCGAGGCCTCGGCGCGCTCGATTTCGCTGGTGAAGGAAGCGGTGGGCAACGAGACCGTACCGGCCATGTACCTATTGGGCGAACGCTATGTGGGCGCGATGGAGAACCTCGCGGGGAGCAGCAATGCCAAGGTGGTGGTGTTGCCGGCTGAC  >  NC_002947/5501096‑5501392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.