New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5190394	9 (0.520)	3 (0.190)	3/258	1.8	28.1%	intergenic (‑81/+93)	PP_4570/cysK	hypothetical protein/cysteine synthase A
	?	NC_002947	= 5190411	7 (0.440)					intergenic (‑98/+76)	PP_4570/cysK	hypothetical protein/cysteine synthase A

GCGCAAGTGCACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5190239‑5190394 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcccgccCGGGTTGTTTTTACCGCGGCGGGATCGGTTTATGATGGCAGGATGATTTTCTGGAGAGCAGGCAGCGCAGCCGTGACTCTTCCTCAAGGAGTGAAAGCATGACCTTTTCCTTTGCAGCCAAGGCGGGTGTCTTGCTGGTGTTT  <  NC_002947/5190411‑5190269                                                                                                                                                                                                                                                                                                             GCGCAAGTGCACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGAT                                                                                                                                                       >  2:383711/1‑150                                       ccagGACACCTGCCTTGGCTGGAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGGTTTA                                                                                                                 <  1:174933/146‑1                                                                       GTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGA                                                                                                                         >  1:230319/1‑110                                                                       GTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGA                                                                                                                         <  2:230319/110‑1                                                                                                                                                      TCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGGTTTATGATGGCAGGATGATTTTCTGGAGAGCAGGCAGCGCAGCCGTGACTCTTCCTCAAGGAGTGAAAGCATGACCTTTTCCTTTGCAGCCAAGGCGGGTGTCTTGCTGGTGTTT  >  1:210992/1‑150                                                                                                                                                           CCCGGGTTGTTTTTACCGCGGCGGGATCGGTTTATGATGGCAGGATGATTTTCTG                                                                                            >  1:243735/1‑55                                                                                                                                                           CCCGGGTTGTTTTTACCGCGGCGGGATCGGTTTATGATGGCAGGATGATTTTCTG                                                                                            <  2:243735/55‑1                                                                                                                                                                                                                                                                                                             GCGCAAGTGCACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5190239‑5190394 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcccgccCGGGTTGTTTTTACCGCGGCGGGATCGGTTTATGATGGCAGGATGATTTTCTGGAGAGCAGGCAGCGCAGCCGTGACTCTTCCTCAAGGAGTGAAAGCATGACCTTTTCCTTTGCAGCCAAGGCGGGTGTCTTGCTGGTGTTT  <  NC_002947/5190411‑5190269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.