New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 174474	NA (NA)	11 (0.370)	7/252	2.6	NA	noncoding (1272/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174479	NA (NA)					noncoding (1277/2902 nt)	PP_23SA	23S ribosomal RNA

AGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/174320‑174474 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgagtTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTTGA  <  NC_002947/174479‑174334                                                                                                                                                                                                                                                                                                               AGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATG                                                                                                                                                         <  1:232578/150‑1  GATGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGC                                                                                                                                                        >  2:511110/1‑150  GATGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATAATGACACCGGGGAGGAGCGTTCTTTGAGCCGTTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGC                                                                                                                                                        >  1:500186/1‑150    TGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGA                                                                                                                                                      <  2:420738/150‑1    TGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGA                                                                                                                                                      <  2:272740/150‑1      TAACGGGGCTCAAACCATGCACGGAAGCTACGGGTATCGTCTTCTGATGATGCGGTAGAGGAGCGTGCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT                                                                                                                                                    <  2:649895/150‑1               TCAAACCATGCACCGAAGCTACGGGTATCATCTTACGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTC                                                                                                                                           <  2:705836/150‑1               TCAAACCATGCACCGAAGCTACGGGTATCATCTTACGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTC                                                                                                                                           >  1:705836/1‑150                   ACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCAT                                                                                                                                       <  1:548782/150‑1                       TGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCATTGTC                                                                                                                                   <  1:780786/150‑1                       TGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCAT                                                                                                                                       >  2:507343/1‑146                       TGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCAT                                                                                                                                       <  1:507343/146‑1                          ACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGA                                                                                                                                                      >  1:145476/1‑128                          ACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGA                                                                                                                                                      <  2:145476/128‑1                                             TCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCATT                                                                                                                                      <  1:486335/125‑1                                             TCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCATT                                                                                                                                      >  2:486335/1‑125                                                                     CGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGA                                                                                                                                                      <  1:32530/85‑1                                                                     CGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGA                                                                                                                                                      >  2:32530/1‑85                                                                       TTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT                                                                                                                                                    <  2:618423/85‑1                                                                       TTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT                                                                                                                                                    >  1:618423/1‑85                                                                                              TTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCATTGTC                                                                                                                                   <  2:333927/79‑1                                                                                              TTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTTTTTCACTCGCATTGTC                                                                                                                                   >  1:333927/1‑79                                                                                                     GCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT                                                                                                                                                    >  2:293731/1‑55                                                                                                     GCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT                                                                                                                                                    <  1:293731/55‑1                                                                                                                         GTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAG                                 >  1:511110/1‑150                                                                                                                                                      GCGAGTTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTT    <  2:248629/150‑1                                                                                                                                                      GCGAGTTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTT    <  2:543151/150‑1                                                                                                                                                       CGAGTTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTTG   <  2:66306/150‑1                                                                                                                                                        GAGTTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTTGA  <  1:605184/150‑1                                                                                                                                                        GAGTTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCT                                                                 <  2:546750/87‑1                                                                                                                                                        GAGTTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCT                                                                 >  1:546750/1‑87                                                                                                                                                        GAGTTTTTCACTCGCATTGTCGTTACTAATCTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTTGA  <  2:588682/150‑1                                                                                                                                                           TTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAG                    <  2:35752/129‑1                                                                                                                                                           TTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAG                    >  1:35752/1‑129                                                                                                                                                                                                                                                                                                               AGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGGGTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/174320‑174474 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgagtTTTTCACTCGCATTGTCGTTACTCATGTCAGCATTCGCACTTCTGATACCTCCAGCAAGCTTCTCAACTCACCTTCACAGGCTTACAGAACGCTCCTCTACCGCATCATCATAAGATGATACCCGTAGCTTCGGTGCATGGTTTGA  <  NC_002947/174479‑174334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.