New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1551361 =	33 (1.040)	7 (0.230)	7/260	2.6	18.4%	intergenic (+78/+48)	groL/pykA	chaperonin GroEL/pyruvate kinase II
	?	NC_002947	1551400 =	30 (0.970)					intergenic (+117/+9)	groL/pykA	chaperonin GroEL/pyruvate kinase II
Rejected: Frequency below/above cutoff threshold.

TGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGTCACCTTG  >  NC_002947/1551213‑1551510                                                                                                                                                     |                                                                                                                                                      tGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCtt                                                                                                                                                      >  1:516473/1‑150 (MQ=255)     ggAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgca                                                                                                                                                  >  2:192859/1‑150 (MQ=255)      gAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgcag                                                                                                                                                 >  2:515642/1‑150 (MQ=255)            aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCACAGCACAAg                                                                                                                                           >  1:711938/1‑150 (MQ=255)                       tgGCATGCCTGATATGGGTGGCATGGGTGGCCAGGGCGGCCTGATGTAATCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa                                                                                                                                <  1:653953/150‑1 (MQ=255)                       tgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa                                                                                                                                <  1:192859/150‑1 (MQ=255)                         gCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGc                                                                                                                              >  1:147284/1‑150 (MQ=255)                               ggtggagcaaggtgactgggtgatcctgaccaagggtgacagctaccacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACAAGGCTGCGCTTGAGCCTtgtg                                                                                                                        >  1:61295‑M1/119‑150 (MQ=255)                                  atatGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAgg                                                                                                                                          >  2:563923/1‑129 (MQ=255)                                  atatGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAgg                                                                                                                                          <  1:563923/129‑1 (MQ=255)                                            catgggtggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGt                                                                                                           <  1:103322/150‑1 (MQ=255)                                                      atgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa                                                                                                                                <  1:319119/119‑1 (MQ=255)                                                      atgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa                                                                                                                                >  2:319119/1‑119 (MQ=255)                                                              cATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCgg                                                                                         >  2:76211/1‑150 (MQ=255)                                                              cATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCgg                                                                                         >  2:76172/1‑150 (MQ=255)                                                                             cacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGa                                                                                                             <  2:478881‑M1/43‑1 (MQ=255)                                                                             cacaccatcggtggcaccaatggcatgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGa                                                                                                             >  1:478881‑M1/73‑115 (MQ=255)                                                                                             cATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCACAGCACAAGGCTGCGCTTGa                                                                                                                                >  2:4237/1‑80 (MQ=255)                                                                                             cATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCACAGCACAAGGCTGCGCTTGa                                                                                                                                <  1:4237/80‑1 (MQ=255)                                                                                               tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt                                                        <  2:516473/150‑1 (MQ=255)                                                                                                    catgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCACAGCACAAGGCTGCGCTTGAGcc                                                                                                                             >  2:34706‑M1/50‑76 (MQ=255)                                                                                                    catgaagatcctgcacgtcggtgatccgctggtcggttgatccactcgtTTCACAGCACAAGGCTGCGCTTGAGcc                                                                                                                             <  1:34706‑M1/27‑1 (MQ=255)                                                                                                    aaGCCCCGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATc                                                                      <  1:61719/131‑1 (MQ=255)                                                                                                    aaGCCCCGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATc                                                                      >  2:61719/1‑131 (MQ=255)                                                                                                      gCCCCGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGAACAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCg                                                 >  1:156680/1‑150 (MQ=255)                                                                                                        cccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGAt                                               >  2:420506/1‑150 (MQ=255)                                                                                                         ccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg                                              >  2:562456/1‑150 (MQ=255)                                                                                                           ggTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgt                                            <  2:147284/150‑1 (MQ=255)                                                                                                               tgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACAAGGCTGCGCTTGAGCCTtgt                                                                                                                         <  2:107755‑M1/31‑1 (MQ=255)                                                                                                               tgcacgtcggtgatccgctggtcggttgatccactcgtTTCGCAGCACAAGGCTGCGCTTGAGCCTtgt                                                                                                                         >  1:107755‑M1/39‑69 (MQ=255)                                                                                                                  gcgaACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAg                                     <  1:562456/148‑1 (MQ=255)                                                                                                                   agaACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGc                                    <  1:76211/150‑1 (MQ=255)                                                                                                                   agaACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGc                                    <  1:76172/150‑1 (MQ=255)                                                                                                                        cGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCa                               <  1:515642/150‑1 (MQ=255)                                                                                                                              ttttttATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGCTCAACCGACCAGCGGATCACCGACGTGCAAGATCTTCATGCCATTGGTGCCACAGATGGTGTGGTAACTGTCACCCTTg                         >  1:38353/1‑150 (MQ=255)                                                                                                                              ttttttATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGCTCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCCTg                         <  2:156680/150‑1 (MQ=255)                                                                                                                                  ttATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCa                     <  2:724236/150‑1 (MQ=255)                                                                                                                                               ggCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGAATCACCCAGTc        >  1:457501/1‑150 (MQ=255)                                                                                                                                                gCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt                                                        <  2:397679/101‑1 (MQ=255)                                                                                                                                                gCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt                                                        >  1:397679/1‑101 (MQ=255)                                                                                                                                                     TTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGTCACCTTg  <  1:457917‑M1/150‑1 (MQ=255)                                                                                                                                                     TTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGTCACCTTg  <  1:593963‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGCTGTCACCCTTGGTCAGGATCACCCAGTCACCTTG  >  NC_002947/1551213‑1551510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.