| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 734332 | 29 (0.920) | 6 (0.210) | 6/244 | 2.7 | 17.8% | coding (988/1296 nt) | ndh | NADH dehydrogenase |
| ? | NC_002947 | = 734372 | 29 (1.000) | coding (948/1296 nt) | ndh | NADH dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACAC > NC_002947/734240‑734518 | aTAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGATGTATCTCCGCCTGTACGCGCGGCGGCACGTTACGATCGATACCGGGATGCGGGCTGGCGGCGCAGTCAcc > 1:379086/1‑150 (MQ=255) tCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAg < 2:122844/150‑1 (MQ=255) ttGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCg > 1:178945/1‑150 (MQ=255) tCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGCAGGCGAAGAtg > 2:461637/1‑150 (MQ=255) gTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTg > 2:592230/1‑150 (MQ=255) tctcCAGTCGCTCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACTTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCa < 1:322231/150‑1 (MQ=255) tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcg > 2:572061‑M2/1‑96 (MQ=255) tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcg < 1:572061‑M2/105‑10 (MQ=255) tcCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAgg < 1:3870/150‑1 (MQ=255) cAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGt < 2:634752/150‑1 (MQ=255) gcgcgcCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAgg < 1:300315/150‑1 (MQ=255) gcgcgcCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAgg < 2:178945/150‑1 (MQ=255) aGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGAcc > 1:77394/1‑150 (MQ=255) gCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAg > 2:157720/1‑150 (MQ=255) tttGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCgg > 1:348683/1‑119 (MQ=255) tttGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCgg < 2:348683/119‑1 (MQ=255) ccAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGa > 1:795913/1‑150 (MQ=255) cAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGAt < 2:795913/150‑1 (MQ=255) cGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTgtcgtc < 1:327392/102‑1 (MQ=255) cGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTgtcgtc > 2:327392/1‑102 (MQ=255) gctgGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCa < 1:592230/150‑1 (MQ=255) gctgGTGCGCCGCCTGTACGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATTCGGTTGGTTTcta < 2:379086/150‑3 (MQ=255) ctgGCGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAg < 2:103066/150‑1 (MQ=255) ccgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgct > 1:558684‑M2/1‑47 (MQ=255) ccgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgct < 2:558684‑M2/148‑102 (MQ=255) cgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaa > 1:736068‑M2/1‑46 (MQ=255) cgccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaa < 2:736068‑M2/132‑87 (MQ=255) ccTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgctggtgt < 1:340245‑M2/150‑107 (MQ=255) cTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGcaggcggcgcaccagcaggcttcgatgctggcgcaaagcctgaaggcgcgcctggagaacaaggccctgccgacgtacgagtacaaggactatggctcgctggtgtc > 2:340245‑M2/1‑43 (MQ=255) gcggcgGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGa > 1:397111/1‑150 (MQ=255) aCGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGcgcgcg < 2:397111/150‑1 (MQ=255) gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGa > 1:86256/1‑150 (MQ=255) gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGa > 1:335315/1‑150 (MQ=255) gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTAGCGGGTGGTTTGCAGGGTAggg < 2:151290/80‑1 (MQ=255) gATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTAGCGGGTGGTTTGCAGGGTAggg > 1:151290/1‑80 (MQ=255) gCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCacac > 2:27479/1‑147 (MQ=255) gCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCacac < 1:27479/147‑1 (MQ=255) | ATAGTCCTTGTACTCGTACGTCGGCAGGGCCTTGTTCTCCAGGCGCGCCTTCAGGCTTTGCGCCAGCATCGAAGCCTGCTGGTGCGCCGCCTGTGCGCGCGGCGGCACGTTACGATCGCTGCCGGGTTGCGGGCAGGCGGCGCAGTCACCGAAGGCGAAGATGTTGTCGTCGCGGGTGGTTTGCAGGGTAGGGCGCACGACCAGCTGGTTGATGCGGTTGGTTTCCAGGCCATCGATGTCCTTGAGGAAACCTGGCGCGCGGATACCGGCTGCCCACAC > NC_002947/734240‑734518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |