New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2100000	30 (0.950)	8 (0.270)	7/246	2.5	18.7%	intergenic (‑68/‑137)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100099	42 (1.440)					intergenic (‑167/‑38)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
Rejected: Frequency below/above cutoff threshold.

GTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG  >  NC_002947/2099955‑2100245                                                                                                                                                  |                                                                                                                                                   gtggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcgg                                                                                                                                               <  2:528827‑M2/150‑6 (MQ=255) gtggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcg                                                                                                                                                >  2:689085‑M2/1‑145 (MQ=255) gtggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcg                                                                                                                                                <  1:689085‑M2/149‑5 (MQ=255)  tggGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCGTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcggc                                                                                                                                              >  1:134144‑M2/1‑144 (MQ=255)         gtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaa                                                                                                                                       >  1:247681/1‑150 (MQ=255)             gtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGACGAACGCAAGCCCTGTGGGA‑GCGGGGAACCCCGCGGGCGGGCGCGCAGCGGCCGCCAAAAAAc                                                                                                                                   >  2:194384/1‑150 (MQ=255)                        ttGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTa                                                                                                                        >  1:602040/1‑150 (MQ=255)                          gATCGCAAAGCGGGGGCCGCTTGGCGCCTCCCCGCGCGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAgg                                                                                                                      <  2:609660/150‑1 (MQ=255)                              gCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAgtc                                                                                                                  >  1:739620/1‑150 (MQ=255)                                              ttcgcgcCCCTCCCCCGTCTTACAAGATCTTACAGGTACAGCTTAGCCCCAGGCTGACCGCCAG‑ATTCAGCAAGGTGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgct                                                                                                  <  1:342056/147‑1 (MQ=255)                                                     cccTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCCCTCGATCGc                                                                                           >  2:129578/1‑150 (MQ=255)                                                      ccTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaaaa                                                                                                                                    <  2:710548/108‑1 (MQ=255)                                                      ccTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaaaa                                                                                                                                    >  1:710548/1‑108 (MQ=255)                                                                    cccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCgcgc                                                                            >  2:596913/1‑150 (MQ=255)                                                                     ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgct                                                                           <  2:797851‑M2/150‑74 (MQ=255)                                                                     ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGcc                                                                           >  2:498541/1‑150 (MQ=255)                                                                      cGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgctt                                                                          >  1:797851‑M2/1‑76 (MQ=255)                                                                       gTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCCAagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttg                                                                         <  2:601110‑M2/150‑76 (MQ=255)                                                                       gTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCCAagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcgg                                                                                  >  2:485899‑M2/1‑75 (MQ=255)                                                                       gTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCCAagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcgg                                                                                  <  1:485899‑M2/141‑67 (MQ=255)                                                                       gTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCAGGGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGa                                                                         >  2:28313/1‑150 (MQ=255)                                                                       gTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCAATTGGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGa                                                                         >  2:28283/1‑150 (MQ=255)                                                                        ttCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgc                                                                        <  1:242536‑M2/150‑77 (MQ=255)                                                                           ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgca                                                                     <  2:675820‑M2/150‑80 (MQ=255)                                                                            cacaGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCTCGCCGAATCgg                                                                    <  1:364769/150‑1 (MQ=255)                                                                              caGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTa                                                                  >  1:153843/1‑150 (MQ=255)                                                                               tggTCCAGCGTAGCCCCAGGCTTAACGCAAGCCCCGTGGGA‑GCGGGCCAGCCCGTGGAGGGGCGCGTAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTAc                                                                 <  1:289357/149‑1 (MQ=255)                                                                                  tACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTgg                                                              <  1:528827/150‑1 (MQ=255)                                                                                     aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAc                                                                                                         >  1:47420/1‑104 (MQ=255)                                                                                     aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAc                                                                                                         <  2:47420/104‑1 (MQ=255)                                                                                     aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgc                                                           >  1:350444/1‑150 (MQ=255)                                                                                     aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgc                                                           <  1:596913/150‑1 (MQ=255)                                                                                        ttAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc                                                         <  2:586323/149‑1 (MQ=255)                                                                                        ttAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc                                                         >  1:586323/1‑149 (MQ=255)                                                                                            ccccAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACcgc                                                                              >  1:45473/1‑124 (MQ=255)                                                                                            ccccAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACcgc                                                                              <  2:45473/124‑1 (MQ=255)                                                                                              ccAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAc                                                  <  2:247681/150‑1 (MQ=255)                                                                                                aGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGGCGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAccc                                                >  2:728547/1‑150 (MQ=255)                                                                                                    tGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGt                                            >  1:542675/1‑150 (MQ=255)                                                                                                       aCGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgcagcgcaaggaacgggaaaccggctcggga                                         >  1:675820‑M2/1‑43 (MQ=255)                                                                                                          cAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCgg                                      <  2:350444/150‑1 (MQ=255)                                                                                                          cAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCgg                                      >  1:662286/1‑150 (MQ=255)                                                                                                           aaGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCgg                                      >  2:474592/1‑149 (MQ=255)                                                                                                           aaGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCgg                                      <  1:474592/149‑1 (MQ=255)                                                                                                               ccTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGcacga                                 >  1:614157/1‑148 (MQ=255)                                                                                                                  gtgGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGc                              <  2:614157/150‑1 (MQ=255)                                                                                                                                 gCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTATGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGca                         >  2:428250/1‑141 (MQ=255)                                                                                                                                 gCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTATGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGca                         <  1:428250/141‑1 (MQ=255)                                                                                                                                  cccGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGGCGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg               <  1:728547/150‑1 (MQ=255)                                                                                                                                   ccGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTggg              <  1:194384/150‑1 (MQ=255)                                                                                                                                    cgcgGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgggg             <  2:542675/150‑1 (MQ=255)                                                                                                                                               gcgcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTgg  <  1:369214/150‑1 (MQ=255)                                                                                                                                                 gcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt                                           <  1:679652/107‑1 (MQ=255)                                                                                                                                                 gcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt                                           >  2:679652/1‑107 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGA‑GCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGG  >  NC_002947/2099955‑2100245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.