New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1119638 =	44 (1.200)	9 (0.250)	9/264	2.6	17.4%	coding (626/1494 nt)	pepA	cytosol aminopeptidase
	?	NC_002947	1119667 =	43 (1.210)					coding (597/1494 nt)	pepA	cytosol aminopeptidase
Rejected: Frequency below/above cutoff threshold.

GGCCTTTTTGCCGCCCTGGTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCTTTGTCGGC  >  NC_002947/1119490‑1119783                                                                                                                                                     |                                                                                                                                                   gccgcgcgcgctgaaaaaggtcaccctgctggccgacaaagccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgacctacctttgccacccaAg                                                                                                                                                   >  1:891149‑M1/149‑150 (MQ=255)            cgccCTGGTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCt                                                                                                                                        >  2:592972/1‑150 (MQ=255)            cgccCTGGTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCt                                                                                                                                        >  1:267657/1‑150 (MQ=255)             gccCTGGTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGGTCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTg                                                                                                                                       >  2:105851/1‑150 (MQ=255)               ccTGGTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGtt                                                                                                                                     >  1:899426/1‑150 (MQ=255)                  ggTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGGCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑gg                                                                                                                                 >  1:277640/1‑150 (MQ=255)                            cACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCt                                                                                                                       >  2:887994/1‑150 (MQ=255)                            cACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCt                                                                                                                       >  2:124076/1‑150 (MQ=255)                               gATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTgg                                                                                                                    <  1:242552/150‑1 (MQ=255)                                gccgacaaagccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCTACCTGGCCTGTTC‑GGCCAGGt                                                                                                                           >  1:663150‑M1/118‑142 (MQ=255)                                gccgacaaagccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCTACCTGGCCTGTTC‑GGCCAGGt                                                                                                                           <  2:663150‑M1/25‑1 (MQ=255)                                 tCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGt                                                                                                                  >  1:794796/1‑150 (MQ=255)                                     gCGTGGCGGCTGGTCGCTTCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCa                                                                                                              >  1:421030/1‑150 (MQ=255)                                      aaagccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTg                                                                                                                 <  1:414164‑M1/35‑1 (MQ=255)                                      aaagccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTg                                                                                                                 >  2:414164‑M1/112‑146 (MQ=255)                                          ccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccaccccAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTggg                                                                                                                   <  2:155516‑M1/33‑1 (MQ=255)                                          ccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccaccccAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTggg                                                                                                                   >  1:155516‑M1/108‑140 (MQ=255)                                          ccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCt                                                                                                                                                 <  2:567197‑M1/4‑1 (MQ=255)                                          ccggccaggccgaagtcgagcgtgcggtcaagcatgccagcgccatcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCt                                                                                                                                                 >  1:567197‑M1/108‑111 (MQ=255)                                              cTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTggg                                                                                                     <  1:124076/150‑1 (MQ=255)                                                 gTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGggcgg                                                                                                  >  1:95117/1‑150 (MQ=255)                                                  tCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGggcggc                                                                                                 >  2:812664/1‑150 (MQ=255)                                                         ccTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGc                                                                                          >  1:380438/1‑150 (MQ=255)                                                          cTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCtt                                                                                                                      <  2:367136/121‑1 (MQ=255)                                                          cTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCtt                                                                                                                      >  1:367136/1‑121 (MQ=255)                                                             gCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAg                                                                                      <  2:614533/150‑1 (MQ=255)                                                                 aCGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTcg                                                                                  >  1:335438/1‑150 (MQ=255)                                                                    gCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCgg                                                                               <  1:105851/150‑1 (MQ=255)                                                                      gTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGt                                                                             >  1:852916/1‑150 (MQ=255)                                                                          aaCGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAg                                                                         >  1:82673/1‑150 (MQ=255)                                                                                      cccAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTg                                                             >  2:802123/1‑150 (MQ=255)                                                                                       tcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGt                                                                                                                  <  2:595886‑M1/34‑1 (MQ=255)                                                                                       tcgccagcggcatggccttcacccgcgacctcggcaacctgccgcccaacctttgccacccaAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGt                                                                                                                  >  1:595886‑M1/63‑96 (MQ=255)                                                                                       ccAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTgg                                                            <  1:802123/150‑1 (MQ=255)                                                                                       ccAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTgg                                                            >  1:266023/1‑150 (MQ=255)                                                                                       ccAGGTCCTTAATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTgg                                                            >  1:446144/1‑150 (MQ=255)                                                                                                  aTCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTg                                                 <  1:121383/150‑1 (MQ=255)                                                                                                   tCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCACGGTGGGCAAAGGTTGGGCGGCAGGTTGCCGACGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTgg                                                >  1:384884/1‑150 (MQ=255)                                                                                                     tttttCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCa                                              >  1:71387/1‑150 (MQ=255)                                                                                                          ctcGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCtt                                         <  2:794796/150‑1 (MQ=255)                                                                                                           tcGTCCAGCACTTCAACCTTGAGGGCATTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGggcggc                                                                                                 >  2:520977/1‑93 (MQ=255)                                                                                                           tcGTCCAGCACTTCAACCTTGAGGGCATTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGggcggc                                                                                                 <  1:520977/93‑1 (MQ=255)                                                                                                              tCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGAcc                                     >  2:737484/1‑150 (MQ=255)                                                                                                               ccAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCg                                    >  2:349544/1‑150 (MQ=255)                                                                                                                     cTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCAt                                                                    >  1:623589/1‑112 (MQ=255)                                                                                                                     cTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCAt                                                                    <  2:623589/112‑1 (MQ=255)                                                                                                                      ttCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTc                             >  2:660876/1‑150 (MQ=255)                                                                                                                        cAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGGTGGCATGCTTGACCGCACGCTcta                           <  2:335438/150‑3 (MQ=255)                                                                                                                             ttGAGGGCCTTCGGCGCCTTGCCCAGCTCCTGGGCCGGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCg                      <  1:592972/150‑1 (MQ=255)                                                                                                                               gAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGc                    <  2:277640/150‑1 (MQ=255)                                                                                                                                    ccTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGc               >  1:548905/1‑150 (MQ=255)                                                                                                                                         tgCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCt          <  2:899426/150‑1 (MQ=255)                                                                                                                                          tttgccacccaAGCTACCTGGCC‑GAACAGGCCAAGGAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCtt         <  2:507952‑M1/139‑1 (MQ=255)                                                                                                                                               ttGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCTTTGTCg    <  2:421030/150‑1 (MQ=255)                                                                                                                                               ttGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCTTTGTCg    <  1:887994/150‑1 (MQ=255)                                                                                                                                                 gCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCTTTGTCGGc  <  1:737484/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGCCTTTTTGCCGCCCTGGTAATTGAGCACGATCAGGCGTGGCGGCTGGTCGCTGCCCTGGCCCACGGCGTAGAACGCGCCCATGCCCAGGTCCTTGATCTTTTTCTCGTCCAGCACTTCAACCTTGAGGGCCTTGTGCGCCTTGCCCAGCTCCTTGGCCTGTTC‑GGCCAGGTAGCTTGGGTGGCAAAGGTTGGGCGGCAGGTTGCCGAGGTCGCGGGTGAAGGCCATGCCGCTGGCGATGGCGCTGGCATGCTTGACCGCACGCTCGACTTCGGCCTGGCCGGCTTTGTCGGC  >  NC_002947/1119490‑1119783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.