New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2765252 = | 26 (0.710) | 8 (0.230) | 7/260 | 3.1 | 23.9% | noncoding (15/199 nt) | PP_mr33 | Cobalamin regulatory region |
? | NC_002947 | 2765283 = | 26 (0.740) | intergenic (‑17/+15) | PP_mr33/PP_2419 | Cobalamin regulatory region/membrane protein | |||||
Rejected: Coverage evenness skew score above cutoff. |
CGGGCGGCAGGCCCAGTGGCATCGATGGAGCAGGCTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACCGCGCCCAGCCACACCGCTGCAATACC > NC_002947/2765134‑2765417 | cGGGCGGCAGGCCCAGTGGCATCGATGGAGCAGGCGCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCa < 2:6076/150‑1 (MQ=255) gcAGGCCCAGTGGCATCGATGGAGCAGGCTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGaa > 2:813765/1‑150 (MQ=255) tCGATGGAGCAGGCTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAg < 2:61245/150‑1 (MQ=255) gCAGGCTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTACGTGGTGGAAACCGGCGGACCGCATGGTGGACCATGGGGACGCCAGGTGATAACGCTTTTCACAAGTACTTCaa > 2:302539/1‑149 (MQ=255) gCTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCaa > 1:836639/1‑150 (MQ=255) cTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAAc < 2:836639/150‑1 (MQ=255) ttGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGa > 1:179275/1‑150 (MQ=255) ttCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGaa < 2:660441/110‑1 (MQ=255) gtCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGaa > 1:660441/2‑110 (MQ=255) aTTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAggcgggc < 2:535946/150‑1 (MQ=255) tGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTAGCGGCAACGCTGCTTCAGGAGGGCGCACCcg > 1:639127/1‑150 (MQ=255) gTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCcgc < 1:813765/150‑1 (MQ=255) gCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACgg < 1:238583/107‑1 (MQ=255) gCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCAAACgg > 2:238583/1‑107 (MQ=255) cAGGCCTGGGATTCCTTTTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGGCACCATGTTAAAACGATTTTCAGAAGCACTTCAGTCACCAGAAGTCGCGGCGACGCTTCTTCAGGCGGGCGAACCCGCGCACCgg < 1:882768/150‑1 (MQ=255) gCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAg < 2:65496/150‑1 (MQ=255) ggATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACa > 1:292811/1‑150 (MQ=255) ttAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGc > 1:894092/1‑150 (MQ=255) tggAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACcgc > 1:519048/1‑150 (MQ=255) cccGCATGGTAGACCATCGCGCCGCCAGGTGTAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACCGCGCCCAGCCACAcc > 2:558117/1‑150 (MQ=255) gCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACCGCGCCCAGCCACACCGCt < 2:519048/150‑1 (MQ=255) gTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACCGCGCCCAGCCACACCGCTGCAAt > 1:615258/1‑150 (MQ=255) gACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACCGCGCCCAGCCACACCGCTGCAATAcc > 2:310184/1‑150 (MQ=255) gACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACACCGCAACCGCCAGTAGCACCGCGCCCAGACACACCGCTGCAATAcc < 2:292811/150‑1 (MQ=255) cATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAgc > 1:627505/1‑103 (MQ=255) cATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAgc < 2:627505/103‑1 (MQ=255) | CGGGCGGCAGGCCCAGTGGCATCGATGGAGCAGGCTCGGCACCTACAGTTGCGGGGGCAGTTCCGATTGGCCTGTATTGGCAGGCCTGGGATTCCCTGTTAGTTCCGTGGTGGAAACCGGCGGCCCGCATGGTAGACCATCGCGCCGCCAGGTGAAAACGCTTTTCAGAAGTACTTCAGCCAACGGATGTCGCGGCGACGCTGCTTCAGGCGGGCGAACCCGCGCACCGGCAGGTACAGCGCAACCGCCAGCAGCACCGCGCCCAGCCACACCGCTGCAATACC > NC_002947/2765134‑2765417 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |