New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6145578	43 (1.170)	7 (0.200)	7/262	3.1	14.2%	coding (190/276 nt)	PP_5390	hypothetical protein
	?	NC_002947	= 6145603	43 (1.220)					coding (165/276 nt)	PP_5390	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGCGACCAGAGGCCATACGCGCTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGCGGAGAGCC  >  NC_002947/6145457‑6145743                                                                                                                                                   |                                                                                                                                             cAGCGACCAGAGGCCATACGCGCTTTCACCATGATTCATGATGGATCTCCCCGCTTATGAATATCAGCCGTACCACGTGGAGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGa                                                                                                                                           >  1:789251/1‑150 (MQ=255)        cAGAGGCCATACGCGCTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGa                                                                                                                                    >  1:539065/1‑150 (MQ=255)         agagGCCATACGCGCTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAg                                                                                                                                   <  2:804427/150‑1 (MQ=255)                  aCGCGCTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAg                                                                                                                          >  2:234068/1‑150 (MQ=255)                    gcgcTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGAt                                                                                                                        >  2:674323/1‑150 (MQ=255)                       cTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAg                                                                                                                     >  1:865566/1‑150 (MQ=255)                          tCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCa                                                                                                                  <  2:27435/150‑1 (MQ=255)                            aCCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGa                                                                                                                                           <  2:635320/123‑1 (MQ=255)                            aCCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGa                                                                                                                                           >  1:635320/1‑123 (MQ=255)                                    tCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGACGGGGGCGGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGCACAGGCGAGCAACACCAGATAAGGCACGGCTCCAAc                                                                                                        >  1:211891/1‑150 (MQ=255)                                        gatgGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGc                                                                                                                                      >  2:811218/1‑116 (MQ=255)                                        gatgGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGc                                                                                                                                      <  1:811218/116‑1 (MQ=255)                                        gatgGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACa                                                                                                    >  1:14571/1‑150 (MQ=255)                                           ggATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATgg                                                                                                 >  1:582405/1‑150 (MQ=255)                                                       ttATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCg                                                                                     <  2:865566/150‑1 (MQ=255)                                                       ttATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCg                                                                                     >  2:582396/1‑150 (MQ=255)                                                          tGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTg                                                                                  <  1:234068/150‑1 (MQ=255)                                                          tGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTg                                                                                  <  1:582396/150‑1 (MQ=255)                                                          tGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTg                                                                                  >  2:294378/1‑150 (MQ=255)                                                           ggATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGa                                                                                 <  2:14571/150‑1 (MQ=255)                                                               atCAGCCTTATCGGAGGGGGTCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAg                                                                             >  2:415663/1‑150 (MQ=255)                                                                    ccTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGa                                                                                                                         <  1:300554/101‑1 (MQ=255)                                                                    ccTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGa                                                                                                                         >  2:300554/1‑101 (MQ=255)                                                                    ccTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATgg                                                                                                 <  1:62006/125‑1 (MQ=255)                                                                    ccTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATgg                                                                                                 >  2:62006/1‑125 (MQ=255)                                                                      ttATCGGAGGGGGTCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAg                                                                      <  1:415663/150‑1 (MQ=255)                                                                              gggggCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGAt                                                              <  1:674323/150‑1 (MQ=255)                                                                                 ggCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCCACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATccc                                                           <  1:294378/150‑1 (MQ=255)                                                                                   ccGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCAc                                                         >  1:527123/1‑150 (MQ=255)                                                                                            tctGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTacca                                                >  1:883517/1‑150 (MQ=255)                                                                                                gCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAAc                                                                                                        <  1:542832/90‑1 (MQ=255)                                                                                                gCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAAc                                                                                                        >  2:542832/1‑90 (MQ=255)                                                                                                  ccTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGc                                          >  1:754202/1‑150 (MQ=255)                                                                                                  ccTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGc                                          >  2:811196/1‑150 (MQ=255)                                                                                                                  cccATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGa                          >  2:171307/1‑150 (MQ=255)                                                                                                                      tGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGc                      >  2:116408/1‑150 (MQ=255)                                                                                                                          cTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGc                              >  1:450937/1‑138 (MQ=255)                                                                                                                          cTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGc                              <  2:450937/138‑1 (MQ=255)                                                                                                                               tGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTg             <  2:754202/150‑1 (MQ=255)                                                                                                                                  atgtcttcATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGc          >  2:71669/8‑150 (MQ=255)                                                                                                                                  aTGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGc          <  2:539065/150‑1 (MQ=255)                                                                                                                                   tGAAGACATGCATCAGCGGCCAGGCGCGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGAAGGAAGTAGAGGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGCg         <  2:211891/150‑1 (MQ=255)                                                                                                                                    gAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACgg                                                                  >  1:435007/1‑92 (MQ=255)                                                                                                                                    gAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACgg                                                                  <  2:435007/92‑1 (MQ=255)                                                                                                                                       gACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGCGgaga     <  2:857432/150‑1 (MQ=255)                                                                                                                                          aTGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGCGGAGAGcc  <  2:582405/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             CAGCGACCAGAGGCCATACGCGCTTTCACCATGATTCATGATGGATCTCCCGGCTTATGGATATCAGCCTTATCGGAGGGGGCCGGTTTGCTCTGGCCCTGGTGATGGTGTCCCCCATGTCCTCGATGCATGAAGACATGCATCAGCGGACAGGCGAGCAACAACAGATAAGGCAGGGCTCCAACGACATGGGCAAGGTGCTCGGTGAGCAGGAAGTAGACGGCGATCCCACCGATTACCACCAGGCCGATTGCGTAGCGTGAACGCCAGAAACTGGGCGGAGAGCC  >  NC_002947/6145457‑6145743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.