| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,424,552:1 | +T | 12.1% | coding (103/915 nt) | PP_4764 → | histone deacetylase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,424,552 | 1 | . | T | 12.1% | 113.2 / 12.0 | 33 | coding (103/915 nt) | PP_4764 | histone deacetylase family protein |
| Reads supporting (aligned to +/- strand): ref base . (20/9); new base T (2/2); total (22/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.64e-01 | |||||||||||
CAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGCCTGCCCT > NC_002947/5424415‑5424699 | cAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGa > 2:385325/1‑150 (MQ=255) ccTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCct > 2:468375/1‑150 (MQ=255) gACCCCATCAATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGccc > 1:609949/1‑150 (MQ=255) gTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTCACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCaa < 1:344873/150‑1 (MQ=255) cGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACa > 2:474386/1‑150 (MQ=255) gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCg‑g < 1:101833/93‑1 (MQ=255) gCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCg‑g > 2:101833/1‑93 (MQ=255) gATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGaccac > 1:20261/1‑105 (MQ=255) gATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGaccac < 2:20261/105‑1 (MQ=255) tCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCg < 1:385325/150‑1 (MQ=255) aCGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTgg > 2:482937/1‑150 (MQ=255) gATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCAt > 1:301851/1‑150 (MQ=255) ccGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGc > 1:301919/1‑150 (MQ=255) cccGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAg > 1:421301/1‑150 (MQ=255) cccGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAg > 2:237001/1‑150 (MQ=255) cccGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAg > 2:287997/1‑150 (MQ=255) cGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCAGGTGGTCGTGCAGcag > 1:352705/1‑62 (MQ=25) cGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCAGGTGGTCGTGCAGcag < 2:352705/64‑3 (MQ=25) cGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAAc > 1:540467/1‑150 (MQ=255) tCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCg > 2:460261/1‑150 (MQ=255) cccGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGa < 1:482937/150‑1 (MQ=255) gATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCt > 2:570460/1‑150 (MQ=255) aaGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTcgcgc > 2:575583/1‑150 (MQ=255) gTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGa < 2:301919/150‑1 (MQ=255) gCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCa < 2:547419/97‑1 (MQ=255) gCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCa > 1:547419/1‑97 (MQ=255) gCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGAcc > 1:220439/1‑150 (MQ=255) tgctgcACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAgc < 1:287997/150‑1 (MQ=255) tgctgcACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAgc < 2:553526/150‑1 (MQ=255) ccaccTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTTGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATTAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTccg > 2:234789/1‑148 (MQ=255) caccTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGc < 1:221018/150‑1 (MQ=255) ggtGGTCGTGCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGc < 2:429769/54‑1 (MQ=255) ggtGGTCGTGCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGc > 1:429769/3‑56 (MQ=255) tGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGCCTGc > 2:415410/1‑150 (MQ=255) tCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGCCTGCCCt > 1:276357/1‑150 (MQ=255) | CAAGATCAGCACTGGCCCTGATTGCGACCCCATCCATGCCGTTGCCGCTGATCTACCACGAAGATTACAGCCCGGAGTTCCCCGCTGAACACCGCTTCCCGATGGACAAGTTCCGCCTGCTGCACGACCACCTGGTCG‑GCAGCGGGCTGACCACCGACCAGGCCCTGCTGCGCCCGGACATCTGCCCCAACGACATCCTCGCCCTGGCCCATGACCGCAGCTACATCGAGCGCTACATGAACGGCGAGCTGTCGCGCGAGGACCAGCGCCGCCTCGGCCTGCCCT > NC_002947/5424415‑5424699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |