New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2668066 =20 (0.870)5 (0.280) 5/190 NT 27.6% intergenic (+41/‑126) prpF/prpD aconitate isomerase/2‑methylcitrate dehydratase
?NC_002947 2668155 = 11 (0.630)intergenic (+130/‑37) prpF/prpD aconitate isomerase/2‑methylcitrate dehydratase

TCGTAATCCGGGCGATCGTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2668232‑2668066
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCCCTCGGCTACCGGGTCGA  >  NC_002947/2668155‑2668280
                                                                                                                                                                                                                                                                                                     
TCGTAATCCGGGCGATCGTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGG                                                                                                                                                 <  2:527091/150‑1
     ATCCGGGCGATCGTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAG                                                                                                                                            >  1:329420/1‑150
         cGGCGATCGTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCG                                                                                                                                        >  2:421926/2‑150
             GATCGTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAA                                                                                                                                    <  2:329420/150‑1
                 GTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCGTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGC                                                                                                                                >  1:591391/1‑150
                                                              CCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAA                                                                                                                                             <  1:476903/92‑1
                                                              CCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAA                                                                                                                                             >  2:476903/1‑92
                                                                                               CCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGAC                                                                         <  1:365740/127‑1
                                                                                               CCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGAC                                                                         >  2:365740/1‑127
                                                                                                     CCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGT                                            >  2:39608/1‑150
                                                                                                       ACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGC                                          <  1:39608/150‑1
                                                                                                       ACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCCGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACATCAACGATCGCCCGGATTACGACCGGGTGC                                          >  1:557530/1‑150
                                                                                                                                           TGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATAT                                                                                         >  1:431477/1‑67
                                                                                                                                           TGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATAT                                                                                         <  2:431477/67‑1
                                                                                                                                               GGATCGGGCAGGCGCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGTATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCCCTCGGCTACCGGGTCGA  <  1:516938/150‑1
                                                                                                                                                                                                                                                                                                     
TCGTAATCCGGGCGATCGTTGAGGTCTACGTTGGCGCTCATATCCAGCTCCCTTCAGAATTGCCGGGGCTGCTGTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTCAAACCCTGTGATTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2668232‑2668066
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcaagcccgcgaagggcTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGATTACGCCCTCGGCTACCGGGTCGA  >  NC_002947/2668155‑2668280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.