New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2884298 = | 30 (1.300) | 4 (0.180) | 4/244 | NT | 13.3% | coding (815/927 nt) | PP_2539 | LysR family transcriptional regulator |
? | NC_002947 | 2884357 = | 23 (1.020) | coding (874/927 nt) | PP_2539 | LysR family transcriptional regulator |
TCCACCAGCAATCGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2884385‑2884298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTG > NC_002947/2884357‑2884448 TCCACCAGCAATCGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCAC‑‑‑‑‑‑CGCCAGCGACACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGAT > 1:105827/1‑150 GATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATT < 1:409874/129‑1 GATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATT > 2:409874/1‑129 GGCGCCGCGACCCGGTGGACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCGTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGAGAAGTGTGAAGGTCCCCATTGATTTCCAGGCCGGTGCAGAtcggaag > 2:314918/1‑143 TCCACCAGCAATCGTGCCGCAGGCGATAACGGCGCCGCGACCCGGTGCACGATGCCGAACGGCTCGCTCAGCGCCCGGAGCGGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2884385‑2884298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgTTATCGCCTGCGGCACGATTGCTGGTGGAGGAACTGACGGCGGGTGAAGTGTGACGGTCCCCATTGATTTCCAGTCCGTTGCCGAAGCGCTG > NC_002947/2884357‑2884448 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |