| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3797840 | 34 (1.470) | 4 (0.180) | 4/238 | NT | 11.4% | coding (197/1449 nt) | vdh | vanillin dehydrogenase |
| ? | NC_002947 | = 3797929 | 30 (1.360) | coding (108/1449 nt) | vdh | vanillin dehydrogenase | |||||
TGCGTGGTCATGGCTGCAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3797687‑3797840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTTGCAGGCGAGGGCCGCCGAGTTCATCGC < NC_002947/3797929‑3797783 TGCGTGGTCATGGCTGCAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGG < 2:139315/150‑1TGCGTGGTCATGGCTACAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGG > 1:251947/1‑150 GCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCG > 1:516775/1‑150 CCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGA < 1:165977/125‑1 CCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGA > 2:165977/1‑125 ACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTT < 2:516775/150‑1 TGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTTGCAGGCGAGGGCCGCCGAGTTCATCGC > 2:423292/1‑150 TGCGTGGTCATGGCTGCAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3797687‑3797840‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTTGCAGGCGAGGGCCGCCGAGTTCATCGC < NC_002947/3797929‑3797783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |