New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4269857 =	18 (0.780)	2 (0.090)	4/242	NT	9.9%	intergenic (‑513/‑48)	PP_3740/mrdA‑I	MFS transporter/transpeptidase
	?	NC_002947	4269876 =	19 (0.850)					intergenic (‑532/‑29)	PP_3740/mrdA‑I	MFS transporter/transpeptidase

CAAGACGGCACACAGGCTGAACACCATGGCAGCGCAGGCCAGAAGCCGACGGTTGACCAGGTGCTTTTCCTTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGC‑GCGCGATCGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4270009‑4269857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgTATTGCCACCCCTCAGGAT  >  NC_002947/4269876‑4269894                                                                                                                                                                               CAAGACGGCACACAGGCTGAACACCATGGCAGCGCAGGCCAGAAGCCGACGGTTGACCAGGTGCTTTTCCTTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTCAGGGGTGGCAATACGC‑GCGCGATCGGGCC                        >  2:91736/1‑150                                                                       TTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATT                 >  1:83640/1‑87                                                                       TTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATT                 <  2:83640/87‑1                                                                                   TTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATTGCCACCCCTCAGGAT  >  1:65847/1‑90                                                                                   TTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGCGGCCCGATCGCG‑CGCGTATTGCCACCCCTCAGGAT  <  2:65847/90‑1                                                                                                                                                                               CAAGACGGCACACAGGCTGAACACCATGGCAGCGCAGGCCAGAAGCCGACGGTTGACCAGGTGCTTTTCCTTTTCGTGGTCCTTTAGCGGGATGGGTTGCGGCATCTGTGAATCGATCCTGAGGGGTGGCAATACGC‑GCGCGATCGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4270009‑4269857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgTATTGCCACCCCTCAGGAT  >  NC_002947/4269876‑4269894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.