New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4349069 = | 29 (1.250) | 7 (0.310) | 7/242 | NT | 24.1% | intergenic (‑390/+84) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
? | NC_002947 | 4393427 = | 16 (0.720) | intergenic (‑369/+101) | PP_3868/PP_3869 | group II intron‑encoding maturase/sheath protein |
CCGAAGGCTACATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4349220‑4349069 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGCAC > NC_002947/4393427‑4393575 CCGAAGGCTACATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAAC < 1:240937/150‑1 ATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCA > 1:101717/1‑150 tTTCTGCTTCGAGAACTACTACAAGACTGGAAAGGCTTACTGATAAGTCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGG < 2:101717/149‑1 TTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTCATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGTGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGGG < 1:348967/150‑1 ATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGGGTT < 1:491393/87‑1 ATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGGGTT > 2:491393/1‑87 ATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCG > 1:144429/1‑49 ATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCG < 2:144429/49‑1 CCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGC > 2:118595/1‑150 CACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGCAC < 1:118595/150‑1 CCGAAGGCTACATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4349220‑4349069 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGCAC > NC_002947/4393427‑4393575 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |