New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5093159 =	31 (1.340)	4 (0.180)	4/236	NT	11.9%	coding (511/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093232 =	30 (1.370)					coding (438/981 nt)	PP_4482	AraC family transcriptional regulator

AGCCGTGCACTGGCGCTGGCAGGATGACTTTGCCGAACGCTTCCCCAAGGTGATTGCCACCAGCCACCTGTTCGACTGGGATCGCGACCGACTGACCGCCTGCGGCGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5093310‑5093159 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGC  >  NC_002947/5093232‑5093380                                                                                                                                                                                                                                                                                                               AGCCGTGCACTGGCGCTGGCAGGATGACTTTGCCGAACGCTTCCCCAAGGTGATTGCCACCAGCCACCTGTTCGACTGGGATCGCGACCGACTGACCGCCTGCGGCGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGA                                                                                                                                                         <  2:337580/150‑1                                                                                GATCGCGACCGACTGACCGCCTGCGGCGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGG                                                                          >  2:378835/1‑150                                                                                                CCGCCTGCGGCGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATC                                                          <  1:378835/150‑1                                                                                                    CTGCGGCGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGACGCGTTAGGATCGGACATCCTGCCAGCGCCAGTTCACGGCTGCCCGGTACCCATCGAGC                                                      >  2:173251/1‑150                                                                                                          CGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTTAGCTTCTGCCCGGTACCCATCGAGCAGGCCC                                                <  1:173251/150‑1                                                                                                                                                     GATCCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCA     <  1:136397/150‑1                                                                                                                                                        CCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGC  >  1:484283/1‑150                                                                                                                                                                                                                                                                                                               AGCCGTGCACTGGCGCTGGCAGGATGACTTTGCCGAACGCTTCCCCAAGGTGATTGCCACCAGCCACCTGTTCGACTGGGATCGCGACCGACTGACCGCCTGCGGCGGTATGGCCGTGACCGACCTGCTGCTGGCGGTGCTGGCGCGCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5093310‑5093159 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgatcCCAGTCGAACAGGTGGCTGGTGGCAATCACCTTGGGGAAGCGTTCGGCAAAGTCATCCTGCCAGCGCCAGTGCACGGCTGCCCGGTACCCATCGAGCAGGCCCAGCATTGCCAGCGGATACACCCCGGCCGACAGGCCACCGATCAGGC  >  NC_002947/5093232‑5093380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.