New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5196431 =	34 (1.470)	4 (0.190)	4/230	NT	12.1%	coding (132/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	5196476 =	27 (1.270)					coding (87/690 nt)	ybgJ	allophanate hydrolase subunit 1

CCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5196586‑5196431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTT  >  NC_002947/5196476‑5196543                                                                                                                                                                                                                                  CCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGC                                                                            >  2:571851/1‑150                                                                      GTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGA                                                                          >  1:612518/1‑83                                                                      GTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGA                                                                          <  2:612518/83‑1                                                                                                             TGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTA                             <  1:603784/89‑1                                                                                                             TGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTA                             >  2:603784/1‑89                                                                                                                          CCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTT  >  1:391618/1‑103                                                                                                                          CCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTT  <  2:391618/103‑1                                                                                                                                                                                                                                  CCAGGCCCTCGATGGGCTGGAGGTGTGATGAAGCCGCGAATCGAAGTGGTCGCCATCGACAGCCTGATGGTACGCCTGTTCGACCGTATCGATGAGGTCAACATGCCATGGATGCTCGCCGCCAGCCGGCGCTTGAGCGCGGCGTTCGGCGAGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5196586‑5196431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTT  >  NC_002947/5196476‑5196543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.