New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5288442 = | 21 (0.910) | 3 (0.170) | 3/190 | NT | 16.7% | intergenic (‑75/+109) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
? | NC_002947 | 5288536 = | 14 (0.800) | intergenic (‑169/+15) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
CCGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5288619‑5288442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAG > NC_002947/5288536‑5288670 CCGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTG < 2:272812/150‑1 GGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTG < 2:455710/150‑1 CAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAA > 1:446414/1‑150 CAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAA < 2:403761/150‑1 TTATGAGGCCCATCTGGACAAGGTGTTTGGCAACGCACACTAATTTTATGTCTGTACCGGCCTCTTCGCGGGATTGCCCCCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGG < 1:65190/150‑1 TACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCC < 1:223024/87‑1 TACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCC > 2:223024/1‑87 CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGG > 1:154783/1‑126 CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGG < 2:154783/126‑1 CGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGC > 1:174751/1‑150 GGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCG < 1:272812/150‑1 GGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACA > 1:467890/1‑123 GGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACA < 2:467890/123‑1 GCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAG < 2:174751/150‑1 GCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAG < 1:505290/107‑1 GCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAG > 2:505290/1‑107 CCGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5288619‑5288442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAG > NC_002947/5288536‑5288670 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |