New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5803716	33 (1.430)	4 (0.180)	4/234	NT	11.6%	coding (138/1017 nt)	PP_5081	type IV pili biogenesis protein
	?	NC_002947	= 5803732	30 (1.390)					coding (122/1017 nt)	PP_5081	type IV pili biogenesis protein

GCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5803563‑5803716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGG  <  NC_002947/5803732‑5803584                                                                                                                                                                                                                                                                                                                 GCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGC                                                                                                                                                           >  1:123540/1‑150   TCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATTCCTGGCATCCTCCCGCGCCT                                                                                                                                                         >  1:182997/1‑150     TCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC                                                                                                                                                       <  2:63959/150‑1                                            TGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGA                                                                                                                           <  1:452257/139‑1                                            TGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGA                                                                                                                           >  2:452257/1‑139                                                        ACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGG                                                                                                                             <  1:247847/125‑1                                                        ACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGG                                                                                                                             >  2:247847/1‑125                                                                                                                                                   GCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGC         <  2:353311/150‑1                                                                                                                                                          CCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGTTTGCAAGAGGCGCACTGG  >  2:334552/1‑150                                                                                                                                                                                                                                                                                                                 GCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5803563‑5803716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGG  <  NC_002947/5803732‑5803584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.