New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2296850 = | 39 (1.690) | 4 (0.180) | 4/242 | NT | 9.2% | coding (3315/3645 nt) | sbcC | exonuclease subunit SbcC |
? | NC_002947 | 2296904 = | 41 (1.830) | coding (3261/3645 nt) | sbcC | exonuclease subunit SbcC |
ATGAACAGCGACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCAGGGC > NC_002947/2296710‑2296999 | tcgaacaggcccaccagcagtggcaacgctgggcccgcctcaatgccctgatcggttcggcctccggtgatgtgttccgcaagatcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGccc < 1:310675‑M1/10‑1 (MQ=255) gAACAGCGACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAg > 1:575759/1‑150 (MQ=255) cGACTCGATACGCAAGGTGCTGGGCGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCt < 1:437507/150‑1 (MQ=255) gACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGCATTCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTg > 1:315205/1‑150 (MQ=255) tCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTgccg > 1:345687/1‑150 (MQ=255) cGCAAGGTGCTGGACGCCACCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGGTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCgcgc < 2:264461/150‑1 (MQ=255) cTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCGCGCGCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCgg < 2:225577/150‑1 (MQ=255) ggACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTa > 1:210455/1‑150 (MQ=255) gCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGa > 1:405068/1‑150 (MQ=255) tCGACGCCAGGCCCAGGGCCAGGGCCAGCGCCACCAGGAAGGGTTCCCCGCGCGACCACGCGTGCACCGAACGCAGTTGCTCGCCCATCCCTGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGCGGCGGTAGCGACggg > 2:481526/1‑150 (MQ=255) caatgccctgatcggttcggcctccggtgatgtgttccgcaagatcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCa > 2:310675‑M1/101‑150 (MQ=255) ggCCCAGGGCGAGGGCCAGCGACACCAGGGGGGGTGCCCCGCCGGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGCGCCCGTAGCGACGCGCCAGCTGAc < 1:481526/150‑1 (MQ=255) gCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACg > 1:312918/1‑150 (MQ=255) ggccagCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCGGGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGtt > 1:382481/1‑150 (MQ=255) ggccagCGACACCAGGAAGCTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGtt < 2:405068/150‑1 (MQ=255) gccagCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTg < 1:367321/150‑1 (MQ=255) cGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCgtg < 1:397811/150‑1 (MQ=255) cGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCgtg < 2:164744/150‑1 (MQ=255) gAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTgcagcag > 1:516549/1‑150 (MQ=255) gAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTgcagcag > 2:581040/1‑150 (MQ=255) tttCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCt > 1:46053/1‑79 (MQ=255) tttCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCt < 2:46053/79‑1 (MQ=255) tcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACggg > 2:349232‑M1/57‑103 (MQ=255) tcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACggg < 1:349232‑M1/47‑1 (MQ=255) ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGATGCGGTAGCGACGGTCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAgg < 1:274802/150‑1 (MQ=255) ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAgg > 1:484288/1‑144 (MQ=255) ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAgg < 2:484288/144‑1 (MQ=255) ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAgg > 1:240141/1‑150 (MQ=255) cgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGt > 2:360574/1‑150 (MQ=255) tccccACAACGAGAGCACCGAAGGGCGTTCGTCCTGATTATCCTTTTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGTAGCAGCAGGTCAAGGtt < 2:315205/149‑1 (MQ=255) cgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTa > 2:259250/1‑150 (MQ=255) aCAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGc < 2:516549/150‑1 (MQ=255) gAGGGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGCTTGTAGCCTTgg < 1:84723/150‑1 (MQ=255) cGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCgg < 1:581040/150‑1 (MQ=255) cAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGaa < 1:259250/150‑1 (MQ=255) ttCGTCGCCCATCTCGGTGCCCAGCACCAGCAGCCCGAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGCacac > 2:171994/1‑150 (MQ=255) cgtcgCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACAt < 1:360574/150‑1 (MQ=255) tcgCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCa > 1:361392/1‑150 (MQ=255) tctcGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAgg > 1:73678/1‑150 (MQ=255) ctcGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGc < 2:312918/150‑1 (MQ=255) tgtCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGGGCGGCAGCAGGTCAAGGTTGTAGCCTTGGGCGAGCGTGCGGACCACATCACCGGCGGCCGAAc > 2:40089/1‑150 (MQ=255) tCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGcc > 1:483420/1‑144 (MQ=255) tCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGcc < 2:483420/144‑1 (MQ=255) agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTgg > 2:229404/1‑111 (MQ=255) agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTgg < 1:229404/111‑1 (MQ=255) agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACAt > 1:47266/1‑130 (MQ=255) agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACAt < 2:47266/130‑1 (MQ=255) gcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCa > 2:275978/1‑150 (MQ=255) gcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGACCGGTGAGCTGGACACATCACCGGAGGCCGAACCGATCa > 2:206433/1‑150 (MQ=255) CAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCAGGGc < 1:506861‑M1/150‑1 (MQ=255) | ATGAACAGCGACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCAGGGC > NC_002947/2296710‑2296999 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |