New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3070491	32 (1.380)	4 (0.180)	4/246	NT	12.8%	intergenic (+16/‑338)	aldB‑II/pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D
	?	NC_002947	= 3070569	23 (1.010)					intergenic (+94/‑260)	aldB‑II/pqqD‑II	aldehyde dehydrogenase/coenzyme PQQ synthesis protein D

CGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTACCCGTACCAACGCACCCCGCAAGCT  >  NC_002947/3070342‑3070619                                                                                                                                                      |                                                                                                                                 cGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTT                                                                                                                                  <  1:616109‑M1/150‑1 (MQ=255)               ttCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCg                                                                                                                    >  2:87831/1‑150 (MQ=255)                  ggggggTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTc                                                                                                                 >  2:500529/1‑150 (MQ=255)                   gggggTACAAGAAGTCCGGTGTTGCCGGTGAGTGCGATAAAATCATCCTTAACAATTTTCACGCGCGGATGAACCGGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTACCCGCTcc                                                                                                                <  1:473977/150‑1 (MQ=12)                                 tCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGc                                                                                                  >  2:214177/1‑150 (MQ=255)                                        ttGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTcc                                                                                           >  2:440631/1‑150 (MQ=255)                                         tGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCa                                                                                          <  2:498802/150‑1 (MQ=255)                                                      cacaAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTgaaga                                                                             >  2:555646/1‑150 (MQ=255)                                                        caAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTgaagaaa                                                                           <  1:203110/150‑2 (MQ=255)                                                        caAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAAc                                                                           >  1:318150/1‑150 (MQ=255)                                                           gatgatGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTtgcgggctcgcccgcccccacaggttcttcaccggttctggaaccagcggtgaacctg                                                                        >  1:445925‑M1/1‑92 (MQ=255)                                                           gatgatGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCAc                                                                                                     >  2:210339/1‑121 (MQ=255)                                                           gatgatGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCAc                                                                                                     <  1:210339/121‑1 (MQ=255)                                                             tgatgCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCtgtg                                                                      <  1:440631/150‑1 (MQ=255)                                                              gctccTTGACCCTTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCAAGTGATTGACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCCGGTTCCAGACCCGGTGAAGAACCTGTgg                                                                     <  1:500529/146‑1 (MQ=18)                                                              gatgCTTCACCAGTATCAGCAGAGCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTgg                                                                     <  1:128545/150‑1 (MQ=255)                                                                tgCTTCACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAAGCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCAACAGGTTCACCGCTAGTTCCAGAACCGGTGAAGAACCTGTgggg                                                                   <  1:171289/150‑1 (MQ=255)                                                                 gCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACTGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGAgggcg                                                                  >  2:171289/1‑148 (MQ=255)                                                                    tGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTtgcgggctcgcccgcccccacaggttcttcaccggttctggaaccagcggtgaacctgtgggagcgg                                                               <  2:445925‑M1/150‑68 (MQ=255)                                                                                gcagACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTtgcgggctcgcccgcccccacaggttcttcatcggctgtgcgaccagcggggaacgagtggcggcgtgcaagacagaaa                                                   >  2:162773‑M1/1‑71 (MQ=255)                                                                                   gACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAg                                                <  2:307628/150‑1 (MQ=255)                                                                                      cAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGc                                             >  2:189790/1‑150 (MQ=255)                                                                                             ctgctgGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGcaca                                      <  1:214177/150‑1 (MQ=255)                                                                                                 tgGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCAcatgca                                  >  1:517285/1‑150 (MQ=255)                                                                                                  ggTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCAcatgcat                                 <  1:87831/150‑1 (MQ=255)                                                                                                    tGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATgg                               <  2:318150/150‑1 (MQ=255)                                                                                                     gtgctACGAAATCAACCCGCTGGGCTTCTTCTAAACCGCCTCTCGGCCTTtgcgggttcgcccgcccccataggttcttcaccggttctggaaccagcggtgaacctgtgggagcgggcaagcccgcgaaggccgcgacgcggtttagaa                              <  1:162773‑M1/148‑101 (MQ=255)                                                                                                         tACGACATCAATCCGGTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTAc                          <  2:428899/150‑1 (MQ=255)                                                                                                         tACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTAc                          >  2:567338/1‑150 (MQ=255)                                                                                                             aCATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAAACTGTGGGGGGGGGCGAGCCCGCAAAAAGGCCGGCACATGCACGGCCTACCCGt                      >  1:28751/1‑150 (MQ=255)                                                                                                               aTCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTACCCGTAc                    >  1:350624/1‑150 (MQ=255)                                                                                                                    tCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATgg                               >  2:404859/1‑134 (MQ=255)                                                                                                                    tCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATgg                               <  1:404859/134‑1 (MQ=255)                                                                                                                    tCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTACCCGTACCAACg               <  1:555646/150‑1 (MQ=255)                                                                                                                              ttcttcTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAg                                                <  2:160386/107‑1 (MQ=255)                                                                                                                              ttcttcTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAg                                                >  1:160386/1‑107 (MQ=255)                                                                                                                              ttcttcTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTACCCGTACCAACGCACCCCGCaa     <  2:517285/150‑1 (MQ=255)                                                                                                                                 ttctAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTATGGGGGCGGGCGAACCCGCAaaggccgagaggcggtttagaagaagcccagcgggttgatttcgtagcac  <  1:162773‑M2/150‑51 (MQ=255)                                                                                                                                                      |                                                                                                                                 CGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGCTTCTTCTAAACCGCGTCGCGGCCTTCGCGGGCTTGCCCGCTCCCACAGGTTCACCGCTGGTTCCAGAACCGGTGAAGAACCTGTGGGGGCGGGCGAGCCCGCAAAAGGGCCGGCACATGCATGGCCTACCCGTACCAACGCACCCCGCAAGCT  >  NC_002947/3070342‑3070619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.