New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3266137	17 (0.740)	4 (0.180)	4/244	NT	20.2%	intergenic (+11/+48)	PP_2863/PP_2864	membrane protein/hypothetical protein
	?	NC_002947	= 3266175	15 (0.660)					intergenic (+49/+10)	PP_2863/PP_2864	membrane protein/hypothetical protein

TGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTA  >  NC_002947/3265990‑3266286                                                                                                                                                    |                                                                                                                                                      tGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTAc                                                                                                                                                     <  1:8903/150‑1 (MQ=255) tGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTAc                                                                                                                                                     >  1:485233/1‑150 (MQ=255)     ggCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTATTTACGTGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGc                                                                                                                                                 <  1:144382/150‑1 (MQ=255)               cTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCgg                                                                                                                                       <  1:549982/150‑1 (MQ=255)                               cccGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTTCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAgg                                                                                                                       <  1:240323/150‑1 (MQ=255)                                        tttCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTTGTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAaca                                                                                                              >  1:319891‑M2/1‑147 (MQ=255)                                           cGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGt                                                                                                           <  1:40272/150‑1 (MQ=255)                                                           cTGGGGGATTGTGCTGCCGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAAc                                                                                           <  1:533424/150‑1 (MQ=255)                                                                         tgctgcACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCcgc                                                                                                                             >  2:22649/1‑102 (MQ=255)                                                                         tgctgcACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCcgc                                                                                                                             <  1:22649/102‑1 (MQ=255)                                                                                            ggCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTtccggccctttcgcggctttacccgcgaagaggccggtacaactgcacatcaaccaaggggca                                                                                        <  1:310172‑M1/120‑64 (MQ=255)                                                                                            ggCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTtccggccctttcgcggctttacccgcgaagaggccggtacaactgcacatcaaccaaggggca                                                                                        >  2:310172‑M1/1‑57 (MQ=255)                                                                                                     gCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAg                                                                                                                        >  1:109338/1‑79 (MQ=255)                                                                                                     gCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAg                                                                                                                        <  2:109338/79‑1 (MQ=255)                                                                                                     gCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTgg                                                 <  2:407218/150‑1 (MQ=255)                                                                                                     gCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTgg                                                 >  1:407218/1‑150 (MQ=255)                                                                                                      cTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGt                                                <  2:353056/150‑1 (MQ=255)                                                                                                                  gggCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCa                                    >  1:594596/1‑150 (MQ=255)                                                                                                                          tCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGATTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACCACTca                            >  2:563107/1‑150 (MQ=255)                                                                                                                            tGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAacaactgcacatcaaccaaggggcagataacgcccgtcaagaaacagccagtctgcc                                                        >  2:310172‑M2/1‑63 (MQ=255)                                                                                                                            tGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAacaactgcacatcaaccaaggggcagataacgcccgtcaagaaacagccagtctgcc                                                        <  1:310172‑M2/120‑58 (MQ=255)                                                                                                                                ccTTGGTTGATGTGCAGTTGTtccggccctttcgcggctttacccgcgaagaggccggtacaactgcacatcaa                                                                                                  >  2:247312‑M1/1‑21 (MQ=255)                                                                                                                                ccTTGGTTGATGTGCAGTTGTtccggccctttcgcggctttacccgcgaagaggccggtacaactgcacatcaa                                                                                                  <  1:247312‑M1/74‑54 (MQ=255)                                                                                                                                      ttGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAacaactgcacatcaaccaagg                                                                                            >  2:247312‑M2/1‑53 (MQ=255)                                                                                                                                      ttGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAacaactgcacatcaaccaagg                                                                                            <  1:247312‑M2/74‑22 (MQ=255)                                                                                                                                           gtgCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGccc           >  2:370658/1‑150 (MQ=255)                                                                                                                                            tgCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGcccc          <  1:322271/150‑1 (MQ=255)                                                                                                                                            tgCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGcccc          >  2:322271/1‑150 (MQ=255)                                                                                                                                                  tgttccggccctttcgcggctttacccgcgaagaggccggtacaactgcacatcaaccaaggggcagataacgcccgtcacaaaacagccagtctgcccagaacacctggtgcagcagcacaatcccccagcacaccacctggaacgaaa    >  1:319891‑M1/1‑3 (MQ=255)                                                                                                                                                    tACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTa  <  1:563107/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TGTTGGCGCAGCAGCTGTTTCGGCACAAGACCCGCAAGGTTTCGTTCCAGGTGGTGTGCTGGGGGATTGTGCTGCTGCACCAGGTGTTCTGGGCAGACTGGCTGTTTCTTGACGGGCGTTATCTGCCCCTTGGTTGATGTGCAGTTGTACCGGCCTCTTCGCGGGTAAAGCCGCGAAAGGGCCGGAACAGGTCGATCACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTA  >  NC_002947/3265990‑3266286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.