New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5080268 =	15 (0.650)	3 (0.140)	3/234	NT	21.4%	intergenic (‑85/+83)	csrA/lysC	carbon storage regulator/aspartokinase
	?	NC_002947	5080305 =	8 (0.370)					intergenic (‑122/+46)	csrA/lysC	carbon storage regulator/aspartokinase

ACGGTGATCTCGCCGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCA  >  NC_002947/5080122‑5080397                                                                                                                                                   |                                                                                                                                  aCGGTGATCTCGCAGTCTCCAATTATCGGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTCCGATTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTcg                                                                                                                                <  1:596692/150‑1 (MQ=255)          tcGCCGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAg                                                                                                                       <  1:358465/150‑1 (MQ=255)          tcGCCGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAg                                                                                                                       >  2:71395/1‑150 (MQ=255)          tcGCCGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAg                                                                                                                       >  2:415272/1‑150 (MQ=255)           cGCCGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAgg                                                                                                                      <  2:443554/150‑1 (MQ=255)              cGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGcag                                                                                                                   <  1:415272/150‑1 (MQ=255)                    cAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGcaggacagg                                                                                                             >  1:363907/1‑150 (MQ=255)                            aGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTgcgc                                                                                                     <  1:581795/150‑1 (MQ=255)                                 ctcGGCGCACCGACGACACAGAATAAATACAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGa                                                                                                <  2:297397/150‑1 (MQ=255)                                           cgtacgcgcgctgcataccgcgttcgatctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcgc                                                                                      >  2:471000‑M1/105‑150 (MQ=255)                                                     aaaTCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGcgcg                                                                            <  2:349728/149‑1 (MQ=255)                                                                  tttCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGccc                                                               >  2:473957/1‑150 (MQ=255)                                                                      tctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGaa                                                                                   <  2:574799‑M1/49‑1 (MQ=255)                                                                      tctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGAAAGGACCTGCGCGGCGAGCAGAAACGCGaa                                                                                   >  1:574799‑M1/78‑126 (MQ=255)                                                                               aaaaCATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAgcgc                                                  <  1:71395/150‑1 (MQ=255)                                                                                             tAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcg                                                                                       >  2:303887/1‑99 (MQ=255)                                                                                             tAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcg                                                                                       <  1:303887/99‑1 (MQ=255)                                                                                                      tGGATATCGGGCCCGGGTCGCAGACGACAACCATTGCCCCGGTTACTCGCCGCACAAGGCAGGACCGTTCTTTCTCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGa                           <  1:473957/150‑1 (MQ=255)                                                                                                                               gacgacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCa  <  2:363907/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                  ACGGTGATCTCGCCGTCTCCAATGATCAGGCTCTCGGCGCACCGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCA  >  NC_002947/5080122‑5080397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.