New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5345732 =	30 (1.300)	4 (0.190)	4/232	NT	12.0%	coding (1082/1935 nt)	acsA‑II	acetyl‑CoA synthetase
	?	NC_002947	5345771 =	31 (1.450)					coding (1121/1935 nt)	acsA‑II	acetyl‑CoA synthetase

CATCGTCTATGGCCCGCTGGCCAATGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGT  >  NC_002947/5345583‑5345878                                                                                                                                                      |                                                                                                                                                   cATCGTCTATGGCCCGCTGGCCAATGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGAt                                                                                                                                                    >  1:301753/1‑150 (MQ=255)   tCGTCTATGGCCCGCTGGCCAATGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGc                                                                                                                                                  >  1:387723/1‑150 (MQ=255)     gTCTATGGCCCGCTGGCCAATGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGt                                                                                                                                                >  1:97437/1‑150 (MQ=255)      tCTATGGCCCGCTGGCCAATGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTg                                                                                                                                               <  2:301753/150‑1 (MQ=255)                        aTGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGc                                                                                                                             <  2:309057/150‑1 (MQ=255)                                            ttCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCAc                                                                                                                      >  2:259215/1‑137 (MQ=255)                                            ttCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCAc                                                                                                                      <  1:259215/137‑1 (MQ=255)                                               gAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTg                                                                                                      <  1:143415/150‑1 (MQ=255)                                                               aCCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGt                                                                                                   >  2:511913/1‑137 (MQ=255)                                                               aCCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGt                                                                                                   <  1:511913/137‑1 (MQ=255)                                                                 cccGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTc                                                                                    >  2:18408/1‑150 (MQ=255)                                                                  ccGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCg                                                                                   >  1:206142/1‑150 (MQ=255)                                                                          tCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCg                                                                           >  1:318455/1‑150 (MQ=255)                                                                                  cTGGCAGGTGGTGGACAAGCACCAGGTAAACACCTTCTACCCCGCCCGGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAAccc                                                                   <  2:194769/150‑1 (MQ=255)                                                                                              ttcccaggcttccgggttgatcggctcgccgacgctgcccagcagacgcaggctttTGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCa                                                                                                                  >  1:424552‑M1/57‑91 (MQ=255)                                                                                              ttcccaggcttccgggttgatcggctcgccgacgctgcccagcagacgcaggctttTGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCa                                                                                                                  <  2:424552‑M1/35‑1 (MQ=255)                                                                                              ggACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGc                                                                             <  1:399420/128‑1 (MQ=255)                                                                                              ggACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGc                                                                             >  2:399420/1‑128 (MQ=255)                                                                                                 cAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCgcgc                                                                                                                                   >  2:162583/1‑71 (MQ=255)                                                                                                 cAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCgcgc                                                                                                                                   <  1:162583/71‑1 (MQ=255)                                                                                                  aaGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATgg                                                   <  1:18408/150‑1 (MQ=255)                                                                                                     cACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCaaaa                                                                                                           <  2:335272/91‑1 (MQ=255)                                                                                                     cACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCaaaa                                                                                                           >  1:335272/1‑91 (MQ=255)                                                                                                        cAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTc                                             >  2:336043/1‑150 (MQ=255)                                                                                                           gTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCgag                                          <  2:318455/150‑1 (MQ=255)                                                                                                           gTGAACAGCTTCTACACCCCCCCGACCGCAGTGCGCACACTGATGCGTGAGGGCTCTGCGCTACTGCAGACCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGGGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCgag                                          <  2:206142/150‑1 (MQ=255)                                                                                                              aaCATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCAACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCgaggag                                       <  1:151348/150‑1 (MQ=255)                                                                                                                  tcttctACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCGGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCg                                   >  2:420843/1‑150 (MQ=255)                                                                                                                  tcggctcgccgacgctgcccagcagacgcaggctttTGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCAc                                                                                                                 <  1:339935‑M1/36‑1 (MQ=255)                                                                                                                  tcggctcgccgacgctgcccagcagacgcaggctttTGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCAc                                                                                                                 >  2:339935‑M1/37‑72 (MQ=255)                                                                                                                     tctACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGc                                >  1:103184/1‑150 (MQ=255)                                                                                                                          acCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTg                                                          >  2:170238/1‑119 (MQ=255)                                                                                                                          acCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTg                                                          <  1:170238/119‑1 (MQ=255)                                                                                                                          acCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCTGGCAAAAg                           >  1:116825/1‑150 (MQ=255)                                                                                                                              ccccGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCt                                                           >  2:167830/1‑114 (MQ=255)                                                                                                                              ccccGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCt                                                           <  1:167830/114‑1 (MQ=255)                                                                                                                                         cTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATtgtg            >  2:217611/1‑150 (MQ=255)                                                                                                                                                   tGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCtggt  <  1:420843/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CATCGTCTATGGCCCGCTGGCCAATGGCGCAATCTCGCTGATGTTCGAAGGCGTGCCCAACTACCCCGATACCTCGCGCTTCTGGCAGGTGGTGGACAAGCACCAGGTGAACATCTTCTACACCGCCCCGACCGCCCTGCGCGCACTGATGCGTGAGGGCTCCGCGCCACTGCAGAGCACCTCACGCAAAAGCCTGCGTCTGCTGGGCAGCGTCGGCGAGCCGATCAACCCGGAAGCCTGGGAATGGTACTTCGAGGAGGTCGGGCAAAAGCGCTGCCCGATTGTGGATACCTGGT  >  NC_002947/5345583‑5345878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.