New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5513290 =	26 (1.120)	3 (0.160)	3/198	NT	16.0%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513398 =	11 (0.600)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

CGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAA  >  NC_002947/5513156‑5513431                                                                                                                                       |                                                                                                                                               gttgcggcccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTG‑CCGGCctct                                                                                                                                >  1:314266‑M1/135‑150 (MQ=255)  ggCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCtt                                                                                                                               >  2:585973/1‑150 (MQ=255)   gcagcaTTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCATCTTc                                                                                                                              >  2:528968/1‑150 (MQ=255)       gcccagcaggcaggtcacttcgccgatcttggcttcgaaggacaggccgcgcaggatgtggctgccgccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTG‑CCGGCCTCTTCGCgg                                                                                                                          <  1:110156‑M1/22‑1 (MQ=255)             cGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAAcc                                                                                                                    <  1:585973/150‑1 (MQ=255)               aCCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAAcccc                                                                                                                  >  1:555289/1‑150 (MQ=255)                ccATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCg                                                                                                                 >  2:335210/1‑150 (MQ=255)                    gtgACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                             >  1:331743/1‑150 (MQ=255)                         cGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAAACCCGCTCCTAcga                                                                                                        >  1:270832/1‑148 (MQ=255)                          gTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCgg                                                                                                                          <  2:510222/131‑1 (MQ=255)                          gTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCgg                                                                                                                          >  1:510222/1‑131 (MQ=255)                            gccgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTgg                                                                                                     <  1:501053/147‑1 (MQ=255)                                        gAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCAt                                                                                         <  1:528968/150‑1 (MQ=255)                                                  gCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTc                                                                               >  1:395885/1‑150 (MQ=255)                                                    ggAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCgg                                                                                                                          <  2:129555/105‑1 (MQ=255)                                                    ggAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCgg                                                                                                                          >  1:129555/1‑105 (MQ=255)                                                     gAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAAt                                                                                              <  1:62181/132‑1 (MQ=255)                                                     gAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATGTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAAt                                                                                              >  2:62181/1‑132 (MQ=255)                                                         gCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtcgt                                                                        <  1:377351/150‑1 (MQ=255)                                                         gCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtcgt                                                                        <  2:395885/150‑1 (MQ=255)                                                                 gAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCgg                                                                <  2:555289/150‑1 (MQ=255)                                                                  aGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGTTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCggg                                                               <  1:480057/150‑1 (MQ=255)                                                                       gTGAAGGCAGATCAGCGGGTCTTCGTGGTGTATCTGGGCCGCTGACCGGCTTTGAATTTTTGGC‑CCTGAGTGCGTCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTAc                                                          <  1:346282/150‑1 (MQ=255)                                                                         gccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGTGGTTCCCGTCGTAGGAGCGGGTTTAccc                                                        <  2:445874‑M1/88‑1 (MQ=255)                                                                         gccgtagtactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTAccc                                                        >  2:505658‑M1/63‑150 (MQ=255)                                                                             gcagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGCAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTTCCCGCGa                                                    >  1:202079/1‑150 (MQ=255)                                                                                tactggtgcagggtgtcgatcttgagcatgtgagagttcctgaaagggatgctgtGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGTGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAaga                                                 >  1:445874‑M1/56‑150 (MQ=255)                                                                                     gCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGCCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCTTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                            <  1:113858/150‑1 (MQ=255)                                                                                                      aTCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATcc                           <  1:335210/150‑1 (MQ=255)                                                                                                           ggCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTc                      <  1:439305/150‑1 (MQ=255)                                                                                                                               tttttGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCaa  >  2:285325/1‑150 (MQ=255)                                                                                                                                       GCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGc                                                                                    <  2:190047‑M1/60‑1 (MQ=255)                                                                                                                                       GCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGc                                                                                    >  1:190047‑M1/1‑60 (MQ=255)                                                                                                                                       |                                                                                                                                               CGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG‑CCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAA  >  NC_002947/5513156‑5513431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.